BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH12FM1.SCF screened BAC_end
(1008 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1235 0.0
>3x_Contig1546
Length = 12922
Score = 1235 bits (623), Expect = 0.0
Identities = 739/774 (95%), Gaps = 3/774 (0%)
Strand = Plus / Minus
Query: 87 aagatcattactcaatgtcgaactgggcaccataatattgctatttaaagttttgccctg 146
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 aagatcattagtcaatgtcgaactgggcaccataatattgctatttaaagttttgccctg 893
Query: 147 tggtaaattcaatagatcaaatattctcttgttgtaaatttccaaataggatactctgac 206
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 892 tggtaaattcaatagttcaaatattctctcgttgtaaatttccaaataggatactctgac 833
Query: 207 agtaaactttttgctggg-attcctacattgatacgatcgaaaatagtgtcaacgcacat 265
|||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 832 agtaaactttttgcgaggtaatcccacattgatacgatcgaaaatagtgtcaacgcacat 773
Query: 266 gggtattataccaggacctgatttggatccactcatggtatatgtcttacctgaaccagt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gggtattataccaggacctgatttggatccactcatggtatatgtcttacctgaaccagt 713
Query: 326 cataccataagcgaaaattgtacaattaaatccctcgaataatttatctatcataggcaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 cataccataagcgaaaattgtacaattaaatccctcgaataatttatctatcataggcaa 653
Query: 386 tgccatagtctcatatactcgatcgttattcatctccggactgaaaacatggtcgaagtt 445
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgccatagtgtcatatactcgatcgttattcatctccggactgaaaacatggtcgaagtt 593
Query: 446 aaattccccaaactcttcatgaataatggagttgttatttacgtgccaagaatcttgttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaattccccaaactcttcatgaataatggagttgttatttacgtgccaagaatcttgttt 533
Query: 506 tccatgagtaggcttgattcttacccctaccgaaatggtaccctggtatgaacttctccc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tccatgagtaggcttgattcttacccctaccgaaatggtaccctggtatgaacttctccc 473
Query: 566 gccacgaattggagaagcggccttcgtagaagaacttcttgctggtgaagaacattgact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gccacgaattggagaagcggccttcgtagaagaacttcttgctggtgaagaacattgact 413
Query: 626 cgaagatgacgaggaagttgatcttggccttactgttgatgaagttcttagatttggtgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgaagatgacgaggaagttgatcttggccttactgttgatgaagttcttagatttggtgt 353
Query: 686 gcntggaggtctcatcaatcttttgggtgaattgcacgatgatgtatggagcggaagtgc 745
|| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 352 gctgggaggtctcatcaatcttttgggtgaattgtacgatgatgtatggagtggaagtgc 293
Query: 746 cactggttt-gttattatgagcgatagg-ttttttatgggtgtgttactctgcttttatt 803
||||||||| || || |||| |||| || | | | | ||||||||||||||||| | ||
Sbjct: 292 cactggtttggtaatcatgatcgattggctatctcaagggtgtgttactctgctatattt 233
Query: 804 tcggtgcaatgtaaaaccttgcctatttccatattgtgtcccaatattattgtt 857
||| ||||||| ||| |||||| || | | ||||||||||| ||||| ||||||
Sbjct: 232 tcgttgcaatgcaaatccttgcgtaatccaatattgtgtcctaatatgattgtt 179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6325
Number of Sequences: 1807
Number of extensions: 6325
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1008
length of database: 10,358,551
effective HSP length: 16
effective length of query: 992
effective length of database: 10,329,639
effective search space: 10247001888
effective search space used: 10247001888
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)