BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZH12RM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1021 1584 0.0
>3x_Contig1021
Length = 3847
Score = 1584 bits (799), Expect = 0.0
Identities = 832/839 (99%), Gaps = 3/839 (0%)
Strand = Plus / Minus
Query: 41 cttggaacaaaatactcgtaatgtaattactattgaatccactccaacttccataaccca 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 cttggaacaaaatactcgtaatgtaattactattgaatccactccaacttccataaccca 1830
Query: 101 agttgacaaggagcaactcgaaggccaaccagcatcttccacttatcccagtaaagatga 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 agttgacaaggagcaactcgaaggccaaccagcatcttccacttatcccagtaaagatga 1770
Query: 161 ggacaatacgaaatctccaattttccctaagatcaacaaatatgaaataccaaaaatcaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 ggacaatacgaaatctccaattttccctaagatcaacaaatatgaaataccaaaaatcaa 1710
Query: 221 ctttactaaatctccttcttttgcagaattatttaaggaaatgcgcatggttttagacga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 ctttactaaatctccttcttttgcagaattatttaaggaaatgcgcatggttttagacga 1650
Query: 281 gtctgatgaagtagtgaattggagaagactatccagtgaagtttcattaaatgaaaaata 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 gtctgatgaagtagtgaattggagaagactatccagtgaagtttcattaaatgaaaaata 1590
Query: 341 tgccattcatataccgactgataagaacttaagatccaataagcgactatcagcagcagt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 tgccattcatataccgactgataagaacttaagatccaataagcgactatcagcagcagt 1530
Query: 401 agaagtccctgaacaagatgaactgtctttccacaaggatgatgttaaatctgatcaaag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 agaagtccctgaacaagatgaactgtctttccacaaggatgatgttaaatctgatcaaag 1470
Query: 461 aacactagatactggagtaactctcactaaaagctcaaaattatctggtaattttaatgt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 aacactagatactggagtaactctcactaaaagctcaaaattatctggtaattttaatgt 1410
Query: 521 aataaaaacttctccagtcaaaattataactcgaaatgagttaactatgaaaagaacttc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 aataaaaacttctccagtcaaaattataactcgaaatgagttaactatgaaaagaacttc 1350
Query: 581 aagatcctcgaacctgaacgatgatcctccaagtttctacacggaagatatgagcaaaaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 aagatcctcgaacctgaacgatgatcctccaagtttctacacggaagatatgagcaaaaa 1290
Query: 641 tgcaagacttgttgagctaacatttcactcgcaggaaga-ttaccggaaagtccttttta 699
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1289 tgcaagacttgttgagctaacatttcactcgcaggaagatttaccggaaagtccttttta 1230
Query: 700 tactccacaaacagaagaaaccaaacctagtgaacacggccatgaagaaacaaatgtgga 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tactccacaaacagaagaaaccaaacctagtgaacacggccatgaagaaacaaatgtgga 1170
Query: 760 tcacttagttccaccagaatcaaccataaaattaccgacggaaacgaccaatagcccagn 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1169 tcacttagttccaccagaatcaaccataaaattaccgacggaaacgaccaatagccaag- 1111
Query: 820 atgaacctgccccattattagatggatttagagttcagtttctttcccatgtcatttga 878
|||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct: 1110 atgaacctgcaccattattagat-gatttagagttcagtttcttccacatgtcatttga 1053
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8036
Number of Sequences: 1807
Number of extensions: 8036
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)