BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA01FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1132 0.0
>3x_Contig1806
Length = 53694
Score = 1132 bits (571), Expect = 0.0
Identities = 659/683 (96%), Gaps = 4/683 (0%)
Strand = Plus / Minus
Query: 86 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31544 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 31485
Query: 146 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31484 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 31425
Query: 206 aggtcgtgatgttgtatttccgatccagattaaggccattggcgatgacgataccgctgt 265
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31424 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 31365
Query: 266 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31364 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 31305
Query: 326 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31304 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 31245
Query: 386 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31244 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 31185
Query: 446 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31184 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 31125
Query: 506 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31124 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 31065
Query: 566 caagaaaatacgaaggagtcatcgctgaaataagtccgattgaaaaagt-catctttcct 624
|||||||||||||||||||||||||||||||||||| || || |||||| |||||| |||
Sbjct: 31064 caagaaaatacgaaggagtcatcgctgaaataagtc-gaatggaaaagtacatcttccct 31006
Query: 625 taagtttagtcacttttcgtattggctattttggtcattctatgctaaaggctggggcta 684
|| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 31005 taggtttagtcacttttcgtattggctattttgttcattctatgctaagtgcatgggcta 30946
Query: 685 ttggtacttcataactaaaaattttcaatttgatgaaccctgtgaataccgctccaagaa 744
||| |||||||||||||| | ||||||| ||||||||| |||||||||| ||| | ||||
Sbjct: 30945 ttgttacttcataactaatagttttcaacttgatgaactctgtgaatactgct-cgagaa 30887
Query: 745 tttggttttgaaaatcaatttta 767
| ||||| || ||||||||||||
Sbjct: 30886 tatggttctg-aaatcaatttta 30865
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8140
Number of Sequences: 1807
Number of extensions: 8140
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)