BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA01RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1356 0.0
>3x_Contig1711
Length = 15491
Score = 1356 bits (684), Expect = 0.0
Identities = 748/768 (97%), Gaps = 1/768 (0%)
Strand = Plus / Minus
Query: 38 aacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatga 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 aacggtgttttcaccacaagccaaaccttgaagcagaaaaaggtagaaaacctaaaatga 7826
Query: 98 tccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcctc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 tccaaaaaaactggagaattagaaagacctgaccagagtaataccaacctttgggtcctc 7766
Query: 158 tgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgtttttttttcttccaga 217
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7765 tgatgtgcaaatagcttttcgacagtaaaggcaaagatatatgttttttttccttccaga 7706
Query: 218 aatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgca 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 aatattagtcttggttctcttttttaatcgaaagcctttcctttactagtcttacttgca 7646
Query: 278 tcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggca 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 tcatgaacgttgcgaggacaagactcataggtgccaaaaaaaaaccaaatacaactggca 7586
Query: 338 cttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatgg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7585 cttatataataatgggaaagtttaatgttaccaccagccagaacggaactttggctatgg 7526
Query: 398 ctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgtttt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7525 ctactcagttcattcagctcagctcttgcagatcttttgatgccacctgcctggtgtttt 7466
Query: 458 tcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttcac 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7465 tcaagcaacatgggatgaataaggaacacatagtgaactcagtaactaaggagttttcac 7406
Query: 518 cataaccgacggcacgaagaaatttctttgtgccgtacgtaaagatcaatgtgtcataca 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7405 cataaccgacggcacgaagaaatttctttgtgccgtacgtaaagatcaatgtgtcataca 7346
Query: 578 ctggttcgcttcacagttgtatgtattgtaaaaatggacagcctaaacaggtgggcagcg 637
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7345 ctggttcgcttcacagttgtatgtattgtaaaaatggacagcctagacaggtgggcagcg 7286
Query: 638 gggcgcattcaagggccataattgtggaagcgacatgagtcaattccggattcttattgg 697
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7285 gggcgcatccaagggccataattgtggaggcgacatgagtcaattccggattcttattgg 7226
Query: 698 ctgaaagcattacttttctggtcttcttctggaacccttaagaccgatcatttttttgag 757
|||| |||||| |||||||| ||||||||||| | ||||||||||||||||| || |||
Sbjct: 7225 ctgagagcatttcttttctgttcttcttctgg-atccttaagaccgatcattcattcgag 7167
Query: 758 aagttttttcagggaacaaagagaaaagaccccctttaatgttaaaaa 805
| ||| | ||||||||||||| || |||||||| || ||||| |||||
Sbjct: 7166 aggttctatcagggaacaaagtgataagaccccattaaatgtaaaaaa 7119
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8451
Number of Sequences: 1807
Number of extensions: 8451
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)