BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA02FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1189 0.0
>3x_Contig1732
Length = 24266
Score = 1189 bits (600), Expect = 0.0
Identities = 704/728 (96%), Gaps = 8/728 (1%)
Strand = Plus / Plus
Query: 89 cggaagcggaggataaaaagagtttaactcgataatcaaacgtgtgaaagatctttactg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 cggaagcggaggataaaaagagtttaactcgataatcaaacgtgtgaaagatctttactg 6250
Query: 149 attttataacctttctcagtaatgatatttgctgtctaataatcgctagagtgaccttaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6251 attttataacctttctcagtaatgatatttgctgtctaataatcgctagagtgaccttaa 6310
Query: 209 ttaacagacaacatgttgtctctttattatgttcacttgataaatttgattattccctgc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 ttaacagacaacatgttgtctctttattatgttcacttgataaatttgattattccctgc 6370
Query: 269 ttaaaacccaaaatgataaatgatgatgccgaatgactgatgatgaatgaacgactgttg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371 ttaaaacccaaaatgataaatgatgatgccgaatgactgatgatgaatgaacgactgttg 6430
Query: 329 tgctaaatttcaatttaacgaactagtctggtaacgaaataaaagtgatgcggaatgaga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6431 tgctaaatttcaatttaacgaactagtctggtaacgaaataaaagtgatgcggaatgaga 6490
Query: 389 agatgaaatgtgcaattgtaaaacctgttaacgtattaatgaccaaaaaaatgattagaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491 agatgaaatgtgcaattgtaaaacctgttaacgtattaatgaccaaaaaaatgattagaa 6550
Query: 449 cccaaaatatagaaaggaaatgaaatgatatgtgtaaaccgtcaagtctatgtcactttt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6551 cccaaaatatagaaaggaaatgaaatgatatgtgtaaaccgtcaagtctatgtcactttt 6610
Query: 509 gtatctgttttgtatctgttttgtttgggaaggacaagtgtatctttgccgta-ttcaac 567
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 6611 gtatctgttttgtatctgttttgtttgtgaaggacaagtgtatctttgccgtatttcaac 6670
Query: 568 agagaatccttgaagatctctttgctgatactttatctgagagatagaaaaccgctttca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6671 agagaatccttgaagatctctttgctgatactttatctgagagatagaaaaccgcttcaa 6730
Query: 628 tagtagtattattctgactgctagaagaccctcgat-atggacactaaatgccttcttat 686
|||||||| || |||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 6731 tagtagta-taatctgactgctagaaga-cctcgataatggacactaaatgccttcttat 6788
Query: 687 atatgtatctcaaactttggacaaaacccttgagagttgat-accgaggacgggtgacgc 745
||||||||||||||| |||||||||||||| ||||| |||| || ||| |||| ||||||
Sbjct: 6789 atatgtatctcaaac-ttggacaaaaccctcgagag-tgataacagagaacggatgacgc 6846
Query: 746 acagaaaaagtggttcagtagattcccaaaactttataactgcccacttttaaccagccc 805
||||||||| | |||||||| ||||||||| ||||||||||| ||| ||||||||||
Sbjct: 6847 acagaaaaaagtgatcagtagaatcccaaaac-ttataactgccaactcttaaccagcca 6905
Query: 806 cagtgtac 813
||||||||
Sbjct: 6906 cagtgtac 6913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6971
Number of Sequences: 1807
Number of extensions: 6971
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)