BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA02RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1222 1219 0.0
>3x_Contig1222
Length = 5224
Score = 1219 bits (615), Expect = 0.0
Identities = 683/699 (97%), Gaps = 5/699 (0%)
Strand = Plus / Minus
Query: 50 gtgtattgaagatttgggatttggatagggaatcatcaaaaaccttagcagatccttgca 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3634 gtgtattgaagatttgggatttggatagggaatcatcaaaaaccttagcagatccttgca 3575
Query: 110 attatgagttgttatctgatgagagaaacaccgcttgcgtaaatacagatacgttcaagt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3574 attatgagttgttatctgatgagagaaacaccgcttgcgtaaatacagatacgttcaagt 3515
Query: 170 ttcctgtgttgagcgaatttctacggaagtttgacaacgttctcattgtcatcgtatccg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3514 ttcctgtgttgagcgaatttctacggaagtttgacaacgttctcattgtcatcgtatccg 3455
Query: 230 atcgctgctacagtgacccattggcgacggcattatgtgaattaagtagagggctaagtg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 atcgctgctacagtgacccattggcgacggcattatgtgaattaagtagagggctaagtg 3395
Query: 290 ggatgggtactctaaagaatctatgcttcatgtataagacgactaccaatttcctttcca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3394 ggatgggtactctaaagaatctatgcttcatgtataagacgactaccaatttcctttcca 3335
Query: 350 agttctatttcagagagctaagccattgtcaaagccaactacgattatgtgaattacata 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3334 agttctatttcagagagctaagccattgtcaaagccaactacgattatgtgaattacata 3275
Query: 410 tattcgccaaccgagatattaatcaccaggaagttgacatgtttgatatcgacacgatat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3274 tattcgccaaccgagatattaatcaccaggaagttgacatgtttgatatcgacacgatat 3215
Query: 470 ttgagactacttatttacatgacgtggaaacgctgttcactttgaacataagaaggggta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3214 ttgagactacttatttacatgacgtggaaacgctgttcactttgaacataagaaggggta 3155
Query: 530 agaaagtgattgcacctaggattatgacagtgaatcaattgcaatgtgaggataacacta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3154 agaaagtgattgcacctaggattatgacagtgaatcaattgcaatgtgaggataacacta 3095
Query: 590 caatagtcgatgatctacaatactgtcccctgcttaaaacgattg-aaaatttcaagtgc 648
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 3094 caatagtcgatgatctacaatactgtcccctgcttaaaacgattgaaaaattccaagtgc 3035
Query: 649 cacccggaaagagagttgtattaccaaccttgcaaccattttacttttcgtcagtttaca 708
|||| |||||||||||||||||||| ||| ||| ||||||| || | ||||||| |||||
Sbjct: 3034 caccaggaaagagagttgtattacc-accatgcgaccatttaac-tctcgtcag-ttaca 2978
Query: 709 ttagtaccacttgaagggattttggttgatggatccttc 747
||||| |||| ||||||| || |||||||||||||||
Sbjct: 2977 atagtaacactgaaagggatctt-gttgatggatccttc 2940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6059
Number of Sequences: 1807
Number of extensions: 6059
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)