BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA03FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 827 0.0
>3x_Contig1742
Length = 17167
Score = 827 bits (417), Expect = 0.0
Identities = 522/547 (95%), Gaps = 9/547 (1%)
Strand = Plus / Minus
Query: 308 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 7732
Query: 368 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 7672
Query: 428 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 7612
Query: 488 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 7552
Query: 548 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 7492
Query: 608 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7491 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 7432
Query: 668 ctctttgataattgggtttgncaaatttttccagtcattaaatgcccaatcaacacccga 727
||||||||||||||| |||| |||||||| |||||||||||||| |||||||| ||||
Sbjct: 7431 ctctttgataattggttttgtcaaattttcgaagtcattaaatgccaaatcaaca-ccga 7373
Query: 728 tgatattatttttcagacattcctctaaataggattttctaactggttctgaaggaagct 787
|||||| | ||||||||||| | |||||||| || ||||||||| |||||| ||||||||
Sbjct: 7372 tgatatca-ttttcagacatccatctaaata-gaatttctaact-gttctg-aggaagct 7317
Query: 788 attttgagattgagcgagacccaatctacgtttttctttgaaaattcgtttcttaattga 847
| | |||||||||||||||||||| |||| |||| ||||||||||| |||||| ||||
Sbjct: 7316 a-tctgagattgagcgagacccaacttacg--tttccttgaaaattcg-ttcttagttga 7261
Query: 848 gggaaac 854
|| ||||
Sbjct: 7260 ggaaaac 7254
Score = 408 bits (206), Expect = e-114
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 89 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8010 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 7951
Query: 149 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 7891
Query: 209 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 7831
Query: 269 gtagttgaagtccaagttaatcaact 294
||||||||||||||||||||||||||
Sbjct: 7830 gtagttgaagtccaagttaatcaact 7805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7774
Number of Sequences: 1807
Number of extensions: 7774
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)