BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA03RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1350 0.0
>3x_Contig1731
Length = 24233
Score = 1350 bits (681), Expect = 0.0
Identities = 730/744 (98%), Gaps = 2/744 (0%)
Strand = Plus / Plus
Query: 47 agactagtgggaacccgttgttggaacctgttgacatgagagagcaaaacagtggttatt 106
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3499 agactagtgagaacccgttgttggaacctgtttacatgagagagcaaaacagtggttatt 3558
Query: 107 attggctagggtaactccatcttctcttctcgcctagaacactatgataacaaacttgtc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3559 attggctagggtaactccatcttctcttctcgcctagaacactatgataacaaacttgtc 3618
Query: 167 tattttaagagcgaatgcgttgtcagaacaatgaatagaatgagacttctttgatttttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3619 tattttaagagcgaatgcgttgtcagaacaatgaatagaatgagacttctttgatttttt 3678
Query: 227 tcagaaagcttttccatgcattggaattgacacgtatattcctatgccgatggatcccaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3679 tcagaaagcttttccatgcattggaattgacacgtatattcctatgccgatggatcccaa 3738
Query: 287 ttcaatgcctctcgaacaaacggtacataacccaactggcattgcaacagcacgatgagt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3739 ttcaatgcctctcgaacaaacggtacataacccaactggcattgcaacagcacgatgagt 3798
Query: 347 taattatatacctactacattcagaagtaacaactcctacgcaaaaatcttgcacctcgc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3799 taattatatacctactacattcagaagtaacaactcctacgcaaaaatcttgcacctcgc 3858
Query: 407 ttgatcgcccagtcacacagcagatgcagcgtttctgcaaaaacaggaatttaaacgggc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3859 ttgatcgcccagtcacacagcagatgcagcgtttctgcaaaaacaggaatttaaacgggc 3918
Query: 467 acagcatcggatcccaggattcatgattaaacggttacttgcttacatacacttccaaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3919 acagcatcggatcccaggattcatgattaaacggttacttgcttacatacacttccaaat 3978
Query: 527 ttaacttgctcttgctagcgaaattccattgatttcattaaagttctcagtattaattgc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3979 ttaacttgctcttgctagcgaaattccattgatttcattaaagttctcagtattaattgc 4038
Query: 587 ctttcagaacatccttcgaattatggaacatggaacanaaaaaaaaagatccagtcctcc 646
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4039 ctttcagaacatccttcgaattatggaacatggaacaaaaaaaaaaagatccagtcctcc 4098
Query: 647 tagtcatttatatagaaaacagaatatattcagcagacagaaatcagtttctgaaatttt 706
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4099 tagtcatttatatagaaaacagaatatatacagcagacagaaatcagtttctgaaatttt 4158
Query: 707 taggtattattgtttacacagcacaccggggcaaagcaaccactacccaagatttatttt 766
||||| |||||||||||||||||| ||| |||||||||| ||||| |||||| ||||||
Sbjct: 4159 aaggta-tattgtttacacagcaca-cggagcaaagcaacaactacacaagatatatttt 4216
Query: 767 gggtagaccccgtataggacaccc 790
|||||||||| |||||||||||
Sbjct: 4217 gggtagacccgcaataggacaccc 4240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7100
Number of Sequences: 1807
Number of extensions: 7100
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)