BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA04FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1593 876 0.0
3x_Contig1374 208 1e-53
>3x_Contig1593
Length = 10902
Score = 876 bits (442), Expect = 0.0
Identities = 483/494 (97%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 85 cctcggaacctgctaaagataccaaaaattcggacgaaccatctgatggtaagaagcaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 cctcggaacctgctaaagataccaaaaattcggacgaaccatctgatggtaagaagcaat 10464
Query: 145 aatcaccctcgttgttttgaatgatctattatttaacacaattcgttgatgactgcgaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 aatcaccctcgttgttttgaatgatctattatttaacacaattcgttgatgactgcgaat 10524
Query: 205 aaactttgtacggttttgatacttcatatttatcaaacttcatcatattcatttcaattc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10525 aaactttgtacggttttgatacttcatatttatcaaacttcatcatattcatttcaattc 10584
Query: 265 cttctatgaaggttccaactttgcgatatctttttttcacatcaatctttccattccccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10585 cttctatgaaggttccaactttgcgatatctttttttcacatcaatctttccattccccc 10644
Query: 325 tcccaacatactcatttatatgtcaacgttagtgacggtattggaaattattatatttaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10645 tcccaacatactcatttatatgtcaacgttagtgacggtattggaaattattatatttaa 10704
Query: 385 gtacaaataaaagctcagacactttcattcgaaaaattacaggcacaagttatctaacag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10705 gtacaaataaaagctcagacactttcattcgaaaaattacaggcacaagttatctaacag 10764
Query: 445 atatatcactccagagcagctctg-tctccatattcgcggagattgattgaaacgcccat 503
|||||||||||||||||||||||| ||||||| ||||||||| | | ||| |||||||||
Sbjct: 10765 atatatcactccagagcagctctgttctccattttcgcggagttagtttgtaacgcccat 10824
Query: 504 gttaccattgcgctgccactaaagcggacggcactgagcggagtttgatt-aattatatt 562
||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||
Sbjct: 10825 gttaccattgcgctgccactaaagcggacggcactgagcggtgtttggttaaatcatatt 10884
Query: 563 tcaatagccaaatg 576
|||||||||||||
Sbjct: 10885 ccaatagccaaatg 10898
>3x_Contig1374
Length = 8985
Score = 208 bits (105), Expect = 1e-53
Identities = 204/229 (89%), Gaps = 6/229 (2%)
Strand = Plus / Minus
Query: 564 caatagccaaatgatt-caaatgatggacctcttcactgaaccgcatgatggagctgtga 622
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8972 caatagccaaatgatttcaaatgatggacctctccactgaaccgcatgatggagctgtga 8913
Query: 623 aaactatattttcatccaaatattcgatttagtgtaaccgcttttacattacgcttttac 682
||||||||||||||||||||||| |||| ||||||||| ||| | |||| ||||||| ||
Sbjct: 8912 aaactatattttcatccaaatatccgatatagtgtaacggctatcacatcacgctttcac 8853
Query: 683 cgtggagaccgggggttcgacttcccgtttcggaaggttcttttaattttttctttaact 742
|||||||||||||| ||||||| ||||| ||||| ||||||| ||||||| ||| ||
Sbjct: 8852 cgtggagaccgggg-ttcgactccccgtatcggagttttctttttatttttttcttagct 8794
Query: 743 ctcgttcgggactggaacttttgtaaattctaaaaactttcctttattt 791
||||||||| |||||| |||||| |||| || ||| |||||||||||||
Sbjct: 8793 ctcgttcgg-actgga-cttttg-aaatcctcaaa-ctttcctttattt 8749
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7532
Number of Sequences: 1807
Number of extensions: 7532
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)