BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA04RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig871 1102 0.0
>3x_Contig871
Length = 4172
Score = 1102 bits (556), Expect = 0.0
Identities = 613/628 (97%), Gaps = 3/628 (0%)
Strand = Plus / Plus
Query: 46 atttgaaatccatctatagatacgcccttgttgctctgcaacatcttgtttcaatctgga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 atttgaaatccatctatagatacgcccttgttgctctgcaacatcttgtttcaatctgga 2661
Query: 106 agcaatgatatctctgtccaagtcacgagcatcaaagttattgtaatcctctaattgtgt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 agcaatgatatctctgtccaagtcacgagcatcaaagttattgtaatcctctaattgtgt 2721
Query: 166 ttgacggtcctgttcagtgcttgcggtcgccagagaatcgccaatatcttcagcttcagc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 ttgacggtcctgttcagtgcttgcggtcgccagagaatcgccaatatcttcagcttcagc 2781
Query: 226 ctttaaattctctaaatattgtttagccaatcttcttctcttatcagcagggttttcgcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 ctttaaattctctaaatattgtttagccaatcttcttctcttatcagcagggttttcgcc 2841
Query: 286 ttcaaactcgtcttcagattccaagtattctgctacctcatcgccatcattggattcatc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 ttcaaactcgtcttcagattccaagtattctgctacctcatcgccatcattggattcatc 2901
Query: 346 ttggacatcaccttcatcagaagaaatatccgtgatttcctcatctacctcttcgacaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 ttggacatcaccttcatcagaagaaatatccgtgatttcctcatctacctcttcgacaga 2961
Query: 406 atccctattacgtttttttgagacattgcttgtactagatctagccatggtgtacttggt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 atccctattacgtttttttgagacattgcttgtactagatctagccatggtgtacttggt 3021
Query: 466 ggccctctggttgctgtctcgtctggtttagttgcagctcattgcctgtttcaatgatgt 525
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3022 ggccctctggttgctgtctcgtctggtttagttgcagctcatcgcctgtttcaatgatg- 3080
Query: 526 ttggttcagatgtccaattttttttttagtatcgccaatttgtaaaagaaacgacacccc 585
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 3081 ttggttcagatgtacaatttttttttcagtatcgccaatttgtaaaagaaacgacaccac 3140
Query: 586 ttgaaaagggacaaaatttgaaaaatgcctgaactttccaacagaattaaataatagttt 645
|||||||| ||||||| ||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct: 3141 ttgaaaagtgacaaaaattgaagaatgcatgaac-ttgcaacagaattaaataatagttt 3199
Query: 646 ggaagaattttccttgattcaacgacct 673
||||| | ||| || |||||||||||||
Sbjct: 3200 ggaag-actttactcgattcaacgacct 3226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,306
Number of Sequences: 1807
Number of extensions: 15306
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)