BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA05FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1292 0.0
>3x_Contig1640
Length = 15521
Score = 1292 bits (652), Expect = 0.0
Identities = 787/824 (95%), Gaps = 6/824 (0%)
Strand = Plus / Minus
Query: 86 ctttaacaattgatttcccttctgtagtccatcgataaatttcttttctattagtttaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5314 ctttaacaattgatttcccttctgtagtccatcgataaatttcttttctattagtttaaa 5255
Query: 146 ttcaatggattggaccattgtctccaaatttattatctgatcagaacactgttccaataa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5254 ttcaatggattggaccattgtctccaaatttattatctgatcagaacactgttccaataa 5195
Query: 206 tcgttcctgataatgtatccgctttaacaacaatctcgcacgattatcctgtttcaattg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5194 tcgttcctgataatgtatccgctttaacaacaatctcgcacgattatcctgtttcaattg 5135
Query: 266 cttccccttaagtttaatgcaaagagtccttaactcagctctttcgacccctatcaaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 cttccccttaagtttaatgcaaagagtccttaactcagctctttcgacccctatcaaatt 5075
Query: 326 ttcagtacgacgagaatatctatgtaactcatctttagccatcttcagttgcaacattgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 ttcagtacgacgagaatatctatgtaactcatctttagccatcttcagttgcaacattgc 5015
Query: 386 cttatcggactctgtaacttttattcgacttccttgttgtcccatctcgtgaatatatgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 cttatcggactctgtaacttttattcgacttccttgttgtcccatctcgtgaatatatgt 4955
Query: 446 gcttgtttttatactaccaaaagtactaacaagtgtagctattgaactaccactttcgat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 gcttgtttttatactaccaaaagtactaacaagtgtagctattgaactaccactttcgat 4895
Query: 506 tccgttactaactccaaacccttctccaatatcaaaaagtcgtttgacattaagtcttca 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4894 tccgttactaactccaaacccttctccaatatcaaaaagtcgtttgacaataagtcttca 4835
Query: 566 actgttgggctttcctcatagatgcatagaatggatattcactgtatcgataacgcataa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834 actgttgggctttcctcatagatgcatagaatggatattcactgtatcgataacgcataa 4775
Query: 626 tggacctttggatcgacatttaagatttc-agatagtatatttaaatattacccagacaa 684
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 4774 tggacctttggatcgaca-taaagatttcaagatagtatatttaaatattacccagacaa 4716
Query: 685 agtcacatgcaacccatttgccagaaaaagatgaattagtattcaagtcacgtgaaaata 744
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 4715 agtcacatgcaacccatttgccagaaaaagatgaaatagtattcaagtcacgtgaaatta 4656
Query: 745 caca-aacactgttttgtaaaagaacgttttggccggtcgcaagcccaccaccttgaaat 803
|||| ||||||| |||||||||| || | ||| ||||||||||| || || | ||||||
Sbjct: 4655 cacagaacactg-cttgtaaaagaccgctctgggcggtcgcaagcacaacaacatgaaat 4597
Query: 804 taagcccgcaagaattttgccagccgcctactttctaagttaaggggtttttgacctttt 863
||| ||||||||| || ||||||||||||| ||| |||||| ||||||||||| | ||
Sbjct: 4596 caag-ccgcaagaagttagccagccgcctac-ttcgtagttaaagggtttttgacatatt 4539
Query: 864 tttgaaatgaattttgtcaacttttccatctattgtagttgaac 907
| || |||||| |||||||| | | ||| ||||||||||||
Sbjct: 4538 ctcgagatgaatcatgtcaactatacgatcatttgtagttgaac 4495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)