BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA06FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig868 1239 0.0
>3x_Contig868
Length = 3693
Score = 1239 bits (625), Expect = 0.0
Identities = 663/672 (98%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 85 tattcttgtgtaatcgacctatctgatcttaacttttaaatatccattcgcttctggatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 tattcttgtgtaatcgacctatctgatcttaacttttaaatatccattcgcttctggatt 2680
Query: 145 ttcattttttgatctttttcatatatagatttgttactgacaaccgaagtgcagatgtaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2681 ttcattttttgatctttttcatatatagatttgttactgacaaccgaagtgcagatgtaa 2740
Query: 205 gtcatatctgaactggaatagtattacgtggaaaattatggcaaataccgatactgacgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2741 gtcatatctgaactggaatagtattacgtggaaaattatggcaaataccgatactgacgg 2800
Query: 265 agggaaaacacgatagaaaattgacctcattagatcaattctaacttgggcaccaatctg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2801 agggaaaacacgatagaaaattgacctcattagatcaattctaacttgggcaccaatctg 2860
Query: 325 tatattcagcatcatattaaccgtcggatgaatgacatataacagtgattaggtgagtga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2861 tatattcagcatcatattaaccgtcggatgaatgacatataacagtgattaggtgagtga 2920
Query: 385 cgataaaacctgtagcaaatgcggaagagtacttctaagtgtaaatatattataatacag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2921 cgataaaacctgtagcaaatgcggaagagtacttctaagtgtaaatatattataatacag 2980
Query: 445 taaataataaaagatcatctgtttttgttttctggctaaaattcggttgcattctcaatg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2981 taaataataaaagatcatctgtttttgttttctggctaaaattcggttgcattctcaatg 3040
Query: 505 gttatgtctcttgcatactgagaacctcctctagtgtccttcgcagctgcagtatcttct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3041 gttatgtctcttgcatactgagaacctcctctagtgtccttcgcagctgcagtatcttct 3100
Query: 565 tcggcgtcacctttgtcctccgcatcgcgaggaacgtgattgagttgaacgcttggggca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3101 tcggcgtcacctttgtcctccgcatcgcgaggaacgtgattgagttgaacgcttggggca 3160
Query: 625 tatttagtatgctctagatttgctgaaa--tttaagtagcactttatccaaatacctcgg 682
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct: 3161 tatttagtatgctctaga-ttgctgaaaatattaagtagcactttatccaaatactccgg 3219
Query: 683 tgtattgacgttatacatattagatggtctgacattcaatttgtaatcaggggccatatt 742
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct: 3220 tgtattgacgttatacatattagatggtctgacatccaatttgtaatca-gggccataat 3278
Query: 743 attcgtagtaat 754
||||||||||||
Sbjct: 3279 attcgtagtaat 3290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6849
Number of Sequences: 1807
Number of extensions: 6849
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)