BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1503 0.0
>3x_Contig1496
Length = 9544
Score = 1503 bits (758), Expect = 0.0
Identities = 853/880 (96%), Gaps = 6/880 (0%)
Strand = Plus / Minus
Query: 47 tctcaaaagttgcggcaggagtagcggcactattctcatttgtatgctcttgtccaaaca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 tctcaaaagttgcggcaggagtagcggcactattctcatttgtatgctcttgtccaaaca 1679
Query: 107 taagagtagggaaaacaaatgccggcacacttccgtactttggtagtttatatgttcctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 taagagtagggaaaacaaatgccggcacacttccgtactttggtagtttatatgttcctt 1619
Query: 167 ggttgatatcactttgtaacctctttgacgcattaagttccataggagtgaattcctttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 ggttgatatcactttgtaacctctttgacgcattaagttccataggagtgaattcctttt 1559
Query: 227 ttacatcaaattgtgtattgggctttgagcttgaacttggcgtagtttgcgagcttttta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1558 ttacatcaaattgtgtattgggctttgagcttgaacttggcgtagtttgcgagcttttta 1499
Query: 287 aattatttaaacaatccttggttcccctagatgaccgattttgccaattggactttggat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1498 aattatttaaacaatccttggttcccctagatgaccgattttgccaattggactttggat 1439
Query: 347 cctgtgatatggtcgacagcacatgtccataatgcccgagtgcttccgttctgttacctg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 cctgtgatatggtcgacagcacatgtccataatgcccgagtgcttccgttctgttacctg 1379
Query: 407 acaagttactattacttccaactggaacatccgtgttgttaattgccgcaggaatagtgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 acaagttactattacttccaactggaacatccgtgttgttaattgccgcaggaatagtgt 1319
Query: 467 tgaaatcatttccataattaatacttggtctagcttgaggttgatcgactccaccgtgcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 tgaaatcatttccataattaatacttggtctagcttgaggttgatcgactccaccgtgcc 1259
Query: 527 ccataatattcatgttcccagagtgttgaaacgatataagggagttaacaggagaataca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 ccataatattcatgttcccagagtgttgaaacgatataagggagttaacaggagaataca 1199
Query: 587 ggctataagatggttgagtttgccattt-ctcttgattttgagacagaccagttgtacct 645
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1198 ggctataagatggttgagtttgccatttcctcttgattttgagacagaccagttgtacct 1139
Query: 646 gggtagattttattgcaagcaccggagttgttaatttcggacatgaattgtgaaatatgc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 gggtagattttattgcaagcaccggagttgttaatttcggacatgaattgtgaaatatgc 1079
Query: 706 attgcaggattctgacctacattaaccataaaatgccagttatgcgtaataccacgcaaa 765
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1078 attgcaggattctgacctacattaaccataaaatgcgagttatgcgtaataccacgcaaa 1019
Query: 766 gagttcgattcgatacggtgcttacctactttgtcagtatgaccccaactggttcctgca 825
||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct: 1018 gagttcgatacgatacggtgcttacctacattgtcagtatgagccccactggttcctgca 959
Query: 826 gtttaggggacaagattcccttagcattggatggggatttttccaagcttgacctgtggg 885
| ||| ||||| ||||||| ||||| | ||||| |||| | | ||| ||| ||||||
Sbjct: 958 g-ttaagggacgagattccactagcaattgatggtgattct--ccagcgtgagctgtggc 902
Query: 886 aatccaaaattatgcggggaaattttgggtaacttgattg 925
| | ||||||||||| ||| | |||||||||||||||||
Sbjct: 901 agtacaaaattatgc--ggagagtttgggtaacttgattg 864
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5350
Number of Sequences: 1807
Number of extensions: 5350
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)