BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA08FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1185 0.0
>3x_Contig1711
Length = 15491
Score = 1185 bits (598), Expect = 0.0
Identities = 710/738 (96%), Gaps = 7/738 (0%)
Strand = Plus / Minus
Query: 89 cattagaatatctaaaattcagcttccatatgctggcatgtatgtgagtaatcttggtca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9486 cattagaatatctaaaattcagcttccatatgctggcatgtatgtgagtaatcttggtca 9427
Query: 149 ttttgaccaaagggagtttaatgcaataattggatgtcgttccatttaactttaaatact 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9426 ttttgaccaaagggagtttaatgcaataattggatgtcgttccatttaactttaaatact 9367
Query: 209 aattttgagaagatttatgccgatgaagagttgtccagagtggaatgctcatcccattcc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9366 aattttgagaagatttatgccgatgaagagttgtccagagtggaatgctcatcccattcc 9307
Query: 269 ttagttactgctggtttgggacgactgtttttgcggaaaaatttcgaccattctcttacc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9306 ttagttactgctggtttgggacgactgtttttgcggaaaaatttcgaccattctcttacc 9247
Query: 329 gctgttacgatggtgcagatgagacatgtcgttgtaatgagcacgcatgcagttgaataa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9246 gctgttacgatggtgcagatgagacatgtcgttgtaatgagcacgcatgcagttgaataa 9187
Query: 389 atcacactaacaactcggaaagctgacattggaacatacggattaaattgaaggtacaat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9186 atcacactaacaactcggaaagctgacattggaacatacggattaaattgaaggtacaat 9127
Query: 449 tctttgcaaccaatggccatggttcccaaggggaaagtcataccccaccatgttttctga 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9126 tctttgcaaccaatggccatggttcccaaggggaaagtcataccccaccatgttttctga 9067
Query: 509 tatctataaattttggtgtgtgatcttgaatacgtcaatatttcaatcacacacaagaag 568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9066 tatctataaattttggtgtgtgatcttgaatacgtcaatattccaatcacacacaagaag 9007
Query: 569 gtgaaaaagaattcggttgctagt-ataacatggaaaaaat-agtccaaaattctgg-aa 625
|||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||| ||
Sbjct: 9006 gtgaaaaagaatccggttgctagtaataacatggaaaaaataagtccaaaaatctggaaa 8947
Query: 626 gaccattcaatagcaacctttgcgatgttatcgttttaagtctatattgggatccacggg 685
|||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 8946 gaccatccaatagcaacctttgcgatg-tatccgtttaagtctatattgggatccacggg 8888
Query: 686 atattaaagatcgatgtataatttcacattccgttgttaaccaaactttaccattagcac 745
||| || ||||||||||||||||||||| |||||||||||||||||| |||||| ||||
Sbjct: 8887 atagtagagatcgatgtataatttcaca-tccgttgttaaccaaactataccataggcac 8829
Query: 746 ctttgacccaaggggaccgagaaaaaaaaccaaggagaaaattttttccgcctttgtaaa 805
| ||||||||| |||||||||| ||| || ||||||||| ||||| | ||||| || ||
Sbjct: 8828 c-ttgacccaa-gggaccgagacaaagaaacaaggagaagattttcttcgcctctggtaa 8771
Query: 806 tttatttacatacaaatt 823
|||||| |||||||||||
Sbjct: 8770 tttattaacatacaaatt 8753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6787
Number of Sequences: 1807
Number of extensions: 6787
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)