BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA08RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1166 0.0
>3x_Contig1806
Length = 53694
Score = 1166 bits (588), Expect = 0.0
Identities = 670/691 (96%), Gaps = 5/691 (0%)
Strand = Plus / Minus
Query: 47 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31544 tgaaatcgcttatccattcaccattgagaaaggtattttgaagctatacggcgaggattt 31485
Query: 107 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31484 ccatgctgtaccatctggaaaagatggaatttatgttcttggctcaatcaatgctgcagc 31425
Query: 167 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31424 aggtcgtgatgatgtaattccgatccagattaaggccattggcgatgacgataccgctgt 31365
Query: 227 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31364 tagcgactataaaggtgactctgtcgaatcaacttcttcctactctttattgggaagtca 31305
Query: 287 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31304 aacatttgattcgtcagccgcttcatctgcttctgcagcaacagcttcagaagtttcatc 31245
Query: 347 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31244 ttcaaagtcatcaagtaaaaacgccgctgttgcaaacttttcatattctcacggttgttt 31185
Query: 407 cttctctctgttaattgcaatgattgtttgataagaa-ttaaatttaccaatgtagcttc 465
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31184 cttctctctgttaattgcaatgattgtttgataagaatttaaatttaccaatgtagcttc 31125
Query: 466 gtaatagaagaagtatgtgtaacataattgcatttctattcttttagaacctttctatta 525
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 31124 gtaatagaagaagtatgtgtaacataattgcatttgaattcttttagaacctttctatta 31065
Query: 526 cnagaaaatacgaaggagtcatcgctggaataagtcgaatggaaaagtacatcttccttt 585
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 31064 caagaaaatacgaaggagtcatcgctgaaataagtcgaatggaaaagtacatcttccctt 31005
Query: 586 agttttagtcacttttcgtattggctattttgttcattctattgct-agtgcatggcctt 644
|| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct: 31004 aggtttagtcacttttcgtattggctattttgttcattcta-tgctaagtgcatgggcta 30946
Query: 645 ttgttactt-ataactaataggtttcaacttgatgaactttgtggattctgtttgagaat 703
||||||||| ||||||||||| ||||||||||||||||| |||| || ||| | ||||||
Sbjct: 30945 ttgttacttcataactaatagttttcaacttgatgaactctgtgaatactgctcgagaat 30886
Query: 704 ttgggttctgaaatcaattttttacatactt 734
| |||||||||||||||||| |||||||||
Sbjct: 30885 at-ggttctgaaatcaattttatacatactt 30856
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8787
Number of Sequences: 1807
Number of extensions: 8787
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)