BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA09FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1624 959 0.0
>3x_Contig1624
Length = 12551
Score = 959 bits (484), Expect = 0.0
Identities = 579/604 (95%), Gaps = 5/604 (0%)
Strand = Plus / Minus
Query: 86 tttcggtgaatctttcc-tacaactggtgaagaatttgtattgttccgattggagtgagc 144
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11708 tttcggtgaatctttccatacaactggtgaagaatttgtattgttccgattggagtgagc 11649
Query: 145 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11648 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 11589
Query: 205 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11588 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 11529
Query: 265 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11528 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 11469
Query: 325 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11468 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 11409
Query: 385 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11408 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 11349
Query: 445 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11348 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 11289
Query: 505 tctgcagaactcatttgggaatttgttatatgatagttgactgagttgatttgct-aagc 563
|||||||||||||| || |||| || ||| ||||||||||||||||| ||||| ||||
Sbjct: 11288 cctgcagaactcattgggaaattggtaatagaatagttgactgagttga-ttgctaaagc 11230
Query: 564 aggtacttaagaaagtgcaattgtcttttttttcgatcttttcttttt-acagaaactta 622
||||||| |||||||||||||||||||| ||| |||||| |||||||| ||||||||| |
Sbjct: 11229 aggtactaaagaaagtgcaattgtctttctttccgatctcttctttttaacagaaactaa 11170
Query: 623 attaaagacatttctgtc-aagcatttttttcaaggattaatttgattgaagcttgaaaa 681
|||||||||| ||||||| ||||||| | | |||||| ||| |||| ||||||||||||
Sbjct: 11169 attaaagacaattctgtcaaagcattatgtcaaaggataaatatgatagaagcttgaaaa 11110
Query: 682 actt 685
||||
Sbjct: 11109 actt 11106
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,027
Number of Sequences: 1807
Number of extensions: 11027
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)