BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA09RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1149 1314 0.0
>3x_Contig1149
Length = 5603
Score = 1314 bits (663), Expect = 0.0
Identities = 715/726 (98%), Gaps = 6/726 (0%)
Strand = Plus / Plus
Query: 53 tgaaccagttagaaaaacgaaagtttataaagatgtgagtgaagttattgacgatgggga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tgaaccagttagaaaaacgaaagtttataaagatgtgagtgaagttattgacgatgggga 521
Query: 113 ctcttctcgttatggtggtttcatcaccaaggaacaaagaagattgatgaaggaagaagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctcttctcgttatggtggtttcatcaccaaggaacaaagaagattgatgaaggaagaagc 581
Query: 173 tattgcctcgggtaaaagatccagagctgtgaaatcgaacgatgctgctggtactgcgtt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tattgcctcgggtaaaagatccagagctgtgaaatcgaacgatgctgctggtactgcgtt 641
Query: 233 agtagctacaaatatcgaatctaaggaatcattcggtaagaagatcgaagatttcaagga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agtagctacaaatatcgaatctaaggaatcattcggtaagaagatcgaagatttcaagga 701
Query: 293 aaagaccccagtcggtcgtaaattacatgaatataagattaaactgtgggacgaaagtga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aaagaccccagtcggtcgtaaattacatgaatataagattaaactgtgggacgaaagtga 761
Query: 353 gaacccgttagttgtcatgctaagaactgtctctggtaagattggtgggttatttgcaga 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaacccgttagttgtcatgctaagaactgtctctggtaagattggtgggttatttgcaga 821
Query: 413 gaccgaaagtgcgagagtgtacggtcagttcaagatgatggatccaaccttcaatacaga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaccgaaagtgcgagagtgtacggtcagttcaagatgatggatccaaccttcaatacaga 881
Query: 473 agatttcaccaaacacttgagagaatatatcatcccagaaatcttggaggcctatgttaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 agatttcaccaaacacttgagagaatatatcatcccagaaatcttggaggcctatgttaa 941
Query: 533 aggtgacgaagctgtgctaaagcaatggtttagtgaggctccatacaacgtttacgctgc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 aggtgacgaagctgtgctaaagcaatggtttagtgaggctccatacaacgtttacgctgc 1001
Query: 593 tcaacagaagcagtttcgagaacaagaattgtttgcggacggtaaaaatttagatatcag 652
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1002 tcaacagaagcagttccgagaacaagaattgtttgcggacggtaaaattttagatatcag 1061
Query: 653 aagtgtagaaatcgtcagtgccaagctattaccacctcaggatatccctgtcttgggttg 712
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1062 aggtgtagaaatcgtcagtgccaagctattaccacctcaggatatccctgtctt-ggttg 1120
Query: 713 tcgggttgtcgtgcctcaagaaattcacttattccgaaaaagcaaagaccggttggaaat 772
|| |||||||||| |||||||||||||||||| | | |||||||||||||||| |||||
Sbjct: 1121 tc-ggttgtcgtg-ctcaagaaattcacttatacag-aaaagcaaagaccggt--gaaat 1175
Query: 773 tgcagc 778
||||||
Sbjct: 1176 tgcagc 1181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6716
Number of Sequences: 1807
Number of extensions: 6716
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)