BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA11FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig979 997 0.0
3x_Contig409 264 3e-70
>3x_Contig979
Length = 3913
Score = 997 bits (503), Expect = 0.0
Identities = 581/599 (96%), Gaps = 6/599 (1%)
Strand = Plus / Plus
Query: 243 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 60
Query: 303 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 120
Query: 363 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 180
Query: 423 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 240
Query: 483 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttg 300
Query: 543 catcctcgcttgatggtcatgttaagatcttttccccgttggagaacttccaattcaagt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catcctcgcttgatggtcatgttaagatcttttccccgttggagaacttccaattcaagt 360
Query: 603 ttggctggaaagtttagc-acgctgtgctaagttgtgcagtctcaccaggcgatgcgcaa 661
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttggctgg-aagtttagcaacgctgtgctaagttgtgcagtctcaccaggcgatgcgcaa 419
Query: 662 ggtaataaacatttcgttgcaggtttattctcaggaatttttagccttcaagacgaagaa 721
|||||||||||||||||||||||||||| |||||||| || ||||| |||||||||||||
Sbjct: 420 ggtaataaacatttcgttgcaggtttatcctcaggaa-ttctagccatcaagacgaagaa 478
Query: 722 gaagtccaaaaagatttacctcgctgatgtcctttgatttggaagatttaccatttccac 781
|||||||||||||||| ||||||||||||| || ||||||||| ||||||||||| | ||
Sbjct: 479 gaagtccaaaaagattaacctcgctgatgt-ctctgatttggaggatttaccattacaac 537
Query: 782 agcaagaagaagtctgcgaaatcccaccatttccagagaattgatggaagggtccgaat 840
|||||| ||||||||||||||||| || |||||||||||| ||||| |||||||||||
Sbjct: 538 agcaag-agaagtctgcgaaatccaacaatttccagagaa-tgatgagagggtccgaat 594
>3x_Contig409
Length = 2404
Score = 264 bits (133), Expect = 3e-70
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 87 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 2325
Query: 147 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 2385
Query: 207 agttaactggagc 219
|||||||||||||
Sbjct: 2386 agttaactggagc 2398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5386
Number of Sequences: 1807
Number of extensions: 5386
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)