BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZA11RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1388 0.0
>3x_Contig1794
Length = 36744
Score = 1388 bits (700), Expect = 0.0
Identities = 779/796 (97%), Gaps = 7/796 (0%)
Strand = Plus / Plus
Query: 53 acgcaaatacattgcttccaagctacgatactcatgccgctattccccacagtggctctg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34993 acgcaaatacattgcttccaagctacgatactcatgccgctattccccacagtggctctg 35052
Query: 113 taccattcggtgattctgattttaatatgtatcatgattcgaatctatatttcccaaaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35053 taccattcggtgattctgattttaatatgtatcatgattcgaatctatatttcccaaaac 35112
Query: 173 aagtcattaactcaccagttatgtctccggaagttcaaccattagatgagaaaattggat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113 aagtcattaactcaccagttatgtctccggaagttcaaccattagatgagaaaattggat 35172
Query: 233 tatcacctgtttcgttaagtcctgtggcccacaacagaaccagtctgagtttactgcagc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35173 tatcacctgtttcgttaagtcctgtggcccacaacagaaccagtctgagtttactgcagc 35232
Query: 293 acagaaatctaagccatagcgaattatcaatatcggaactgaatttaaggaataaagtgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35233 acagaaatctaagccatagcgaattatcaatatcggaactgaatttaaggaataaagtgt 35292
Query: 353 tgcagtctccagaattatcctctaatatttaccagcctgagcatattcatgctgaattgg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35293 tgcagtctccagaattatcctctaatatttaccagcctgagcatattcatgctgaattgg 35352
Query: 413 cttcacctcaggcattacctttatctccaatttcatctcccactttggaaaccaatatcg 472
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 35353 cttcacctcaggcattacctttatctccaatttcatctcccac-ttggaaaccaatatcg 35411
Query: 473 ctcgcacaaaatcaaaccatagatgcagtgtctctggacgatgagcttccaccatttcaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35412 ctcgcacaaaatcaaaccatagatgcagtgtctctggacgatgagcttccaccatttcaa 35471
Query: 533 gaagctcttaaagcagagtctctacctgtcgatccacctacatattcggagtcagttgca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35472 gaagctcttaaagcagagtctctacctgtcgatccacctacatattcggagtcagttgca 35531
Query: 593 actgatggtaagacgacaaagtcaaaagctagcagcgaggcttcatcggtggtggttcct 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35532 actgatggtaagacgacaaagtcaaaagctagcagcgaggcttcatcggtggtggttcct 35591
Query: 653 gaaatatgcctttcc-atactacagatttgttagatgaagacattgcttgca-ggttcca 710
||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||
Sbjct: 35592 gaaatatgcctttccaatactacagatttggtagatgaagacattgc-tgcagggttcca 35650
Query: 711 cttcaatggaaatgataaccgatctttaaatc-tccgactgcaatgatgagattccactc 769
||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||
Sbjct: 35651 cttcaatggaaatgatagcggatctttaaatcttccgactgcaatgatgagatcccactc 35710
Query: 770 -cccaatgattggacagcagtttctcgtaaatcatctgtttttggggaggaaacccagta 828
| ||||||| |||||||||||||||||||||||||||||| | ||||||| || |||||
Sbjct: 35711 acacaatgataggacagcagtttctcgtaaatcatctgtttct-gggaggagacgcagta 35769
Query: 829 gcattttcgttcctga 844
||||| ||||||||||
Sbjct: 35770 gcattatcgttcctga 35785
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6269
Number of Sequences: 1807
Number of extensions: 6269
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)