BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1207 0.0
>3x_Contig1774
Length = 27771
Score = 1207 bits (609), Expect = 0.0
Identities = 734/767 (95%), Gaps = 8/767 (1%)
Strand = Plus / Minus
Query: 86 ttcgtaaaaccttttggctaaatggaaatctttttctacaccaagaccgtattcgtacat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13868 ttcgtaaaaccttttggctaaatggaaatctttttctacaccaagaccgtattcgtacat 13809
Query: 146 gtaccctaggttccataagcattgaacattattacaggtttcgtattcttttaccgcctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13808 gtaccctaggttccataagcattgaacattattacaggtttcgtattcttttaccgcctt 13749
Query: 206 ttcgtactcgtttatattatagaatatgtcgccagccaccaccttcgcatcagaatattg 265
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13748 ttcgtactcgcccatattatagaatatgtcgccagccaccaccttcgcatcagaatattg 13689
Query: 266 cccccgaattcctcgctgtccaagtgaagataacaggtaataatgcaatgccatatccct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13688 cccccgaattcctcgctgtccaagtgaagataacaggtaataatgcaatgccatatccct 13629
Query: 326 cctagcttctgggatgatgggtggtttttcgaaaagtctcggtggctgatagagaagcca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13628 cctagcttctgggatgatgggtggtttttcgaaaagtctcggtggctgatagagaagcca 13569
Query: 386 tgctgcagatacctgtgcttcatgatagccttgctcggcagccatagcgtaataccatag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13568 tgctgcagatacctgtgcttcatgatagccttgctcggcagccatagcgtaataccatag 13509
Query: 446 ggcaacctcgctttcctgacgtagtaaagccaaaaaagcatctttcaagtaatacgccaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13508 ggcaacctcgctttcctgacgtagtaaagccaaaaaagcatctttcaagtaatacgccaa 13449
Query: 506 gtgttgttcattctcattaacaaagtatcggtagaagttagtgttatcattgctattgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13448 gtgttgttcattctcattaacaaagtatcggtagaagttagtgttatcattgctattgaa 13389
Query: 566 tctagtggaattctgntctgtcaatcttgccaactcatatgctgcaggaaagtactcaaa 625
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13388 tctagtggaattctgttctgtcaatcttgccaactcatatgctgcaggaaagtactcaaa 13329
Query: 626 acaaatgtgctgtaagtaaagtatttggcatgacactttggttattgtgtgctttttcgt 685
|||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct: 13328 acaaatgtgctgtaggtaaagtatctggcatgacacttgggttattgtgtgc-ttttcgt 13270
Query: 686 tagctgccagttttggacatttgaaaccttgcttacattcccttttgatgaggaagtggt 745
|||||||||| |||||||||||||||||||||| ||| |||||| |||||||| |||| |
Sbjct: 13269 tagctgccag-tttggacatttgaaaccttgctaaca-tcccttctgatgagggagtgtt 13212
Query: 746 attatagaaaattcaagcctttttcctggcaatttttgaaaaattgggcaaattaatcct 805
|||||||||| | |||||| ||||||| | ||| ||| || |||| || ||||||||||
Sbjct: 13211 attatagaaattccaagcc-ttttccttgtcattcttgtaatattgtgc-aattaatcct 13154
Query: 806 aagtccggttttaccaataggggaaacccaattttttatttattctt 852
|||||| || ||| |||||| || |||||| |||||| ||||||||
Sbjct: 13153 aagtcc-gtattagcaatagtgg--acccaaatttttacttattctt 13110
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6564
Number of Sequences: 1807
Number of extensions: 6564
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)