BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB01RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1176 0.0
>3x_Contig1659
Length = 17570
Score = 1176 bits (593), Expect = 0.0
Identities = 696/721 (96%), Gaps = 7/721 (0%)
Strand = Plus / Plus
Query: 42 gcttgaaggcaactttttgataaatatatcacagcattggaaagcgcagtcttgaagaaa 101
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6488 gcttgaaggcaactttttgataaagatatcacagcattggaaagcgcagtcttgaagaaa 6547
Query: 102 gaggtctctatgtgtcagcattaagaacatcttcttcaattcaccggaactctttttcgc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6548 gaggtctctatgtgtcagcattaagaacatcttcttcaattcaccggaactctttttcgc 6607
Query: 162 ggaaaatagctttagatcgccagttggaacagtttgtaaatatttattattcaaattaat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6608 ggaaaatagctttagatcgccagttggaacagtttgtaaatatttattattcaaattaat 6667
Query: 222 ggcgattggtccaaggaatctatccaaattagtattaacaatagttgaatctgagaaata 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6668 ggcgattggtccaaggaatctatccaaattagtattaacaatagttgaatctgagaaata 6727
Query: 282 ttccaaaattgttgaacagtcgccaatatcgcaacgaatgctttcaaggaaaaacgatgc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6728 ttccaaaattgttgaacagtcgccaatatcgcaacgaatgctttcaaggaaaaacgatgc 6787
Query: 342 agctaagaacatgattttcgtggttgaaatagttcttgttgcgataacattcgaggaaag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6788 agctaagaacatgattttcgtggttgaaatagttcttgttgcgataacattcgaggaaag 6847
Query: 402 gatatgttgaattgaagacttttgggccttaacgttatgattagatgaaccacgacgtaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6848 gatatgttgaattgaagacttttgggccttaacgttatgattagatgaaccacgacgtaa 6907
Query: 462 aatagtattcatttccaatgtggtttccttattgtttgaagggaaatccgatacgagagg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6908 aatagtattcatttccaatgtggtttccttattgtttgaagggaaatccgatacgagagg 6967
Query: 522 aggggagttatatgcaataatctctagttcccttctgaac-tcaatgccatatcagattt 580
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6968 aggggagttatatgcaataatctctagttcccttctgaacttcaatgccatatcagattt 7027
Query: 581 gatattggacccatgaataaccatgttgaaccaaatattacgggaagcggaaggttgtac 640
||||| | ||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 7028 gatatggaacccatgaataaccatgttgaaccaaatattacggaaagcggaagttgttac 7087
Query: 641 agcattcttttcccaagatattttttgat-gacacatttttaccagaaactgg-aacagt 698
|||| ||||||||||||||| | | |||| ||||||| || ||||| |||||| ||||||
Sbjct: 7088 agca-tcttttcccaagata-tctctgatagacacatcttcaccaggaactggtaacagt 7145
Query: 699 aatgccaatgggtttcaggaaaaggcgattttggtcggcaacctttggaaatttcatggt 758
||||||||||| || || ||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 7146 aatgccaatggtttcaagaaaaaggcga-tttgttcggcgacc-ttggaaatttcatggt 7203
Query: 759 g 759
|
Sbjct: 7204 g 7204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8491
Number of Sequences: 1807
Number of extensions: 8491
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)