BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB02FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1439 1253 0.0
>3x_Contig1439
Length = 7662
Score = 1253 bits (632), Expect = 0.0
Identities = 757/793 (95%), Gaps = 6/793 (0%)
Strand = Plus / Plus
Query: 86 attcaaaagttgcagttggtgactaagtcttctgagaaagaaggcgaaagggattcagac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4565 attcaaaagttgcagttggtgactaagtcttctgagaaagaaggcgaaagggattcagac 4624
Query: 146 agagatgtacttggtgagagaagagaacaaggaggatcacatggaccgttaaggacaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4625 agagatgtacttggtgagagaagagaacaaggaggatcacatggaccgttaaggacaccc 4684
Query: 206 ttgactgcaacatttttttcattcacggttcccgagcatcaggataaagtcattgcgcat 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4685 ttgactgcaacatcagtatcattcacggttcccgagcatcaggataaagtcattgcgcat 4744
Query: 266 aggctttctatttccacaagaccctcatcgaccaaattgggcactccaaccacagtagcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 aggctttctatttccacaagaccctcatcgaccaaattgggcactccaaccacagtagcc 4804
Query: 326 tcttctagcgaagctcctcccaccatcacaccagtgaattctatcagttccacaactcgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 tcttctagcgaagctcctcccaccatcacaccagtgaattctatcagttccacaactcgt 4864
Query: 386 gaaccggacacgggtcatgttaccaacacgtcaacggcggctactaatactgccaatact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 gaaccggacacgggtcatgttaccaacacgtcaacggcggctactaatactgccaatact 4924
Query: 446 tctggagctggatcatctcgtcagaactctgtgcacatacctggtgatttcatctatttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 tctggagctggatcatctcgtcagaactctgtgcacatacctggtgatttcatctatttc 4984
Query: 506 gaagctaaaccaaataacgggacgcgcaacggtggtgatggcgcagtgtcccctaaaatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4985 gaagctaaaccaaataacgggacgcgcaacggtggtgatggcgcagtgtcccctaaaatg 5044
Query: 566 acaggtgtcctggaccgtgaactatcaccctctgccacgtctcttgattatattgacccc 625
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5045 acaggtgtcctggaccgtgaactatcaccctctgccacgtctcttgattataatgacccc 5104
Query: 626 atcgctgccgtaatcgccaagaangctactaccaagaaacgaatcagtgaagaggaacca 685
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5105 atcgctgccgtcgccgccaagaaggctactaccaagaaacgaatcagtgaagaggaacca 5164
Query: 686 cacgttccttttaccgaattgtttc-anaagaggatgatgaaaaagtcc--ttttttata 742
||||||||||||||||||||||||| | ||||||||||||||||||| | || | |||
Sbjct: 5165 cacgttccttttaccgaattgtttcaaaaagaggatgatgaaaaagtacatattctaata 5224
Query: 743 ggtgcaaccgggttctgtcg-caccattaaagtaccgatgatcatcgataaattgttcag 801
||||||| |||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 5225 ggtgcaa-cggggtctgtcgccaccattaaggtaccgatgatcatcgataaattgttcaa 5283
Query: 802 gat-tattggggagaacaagtgtcgatccccctattactaccaaaacacgcggaactttt 860
||| ||| ||| ||| |||||||||||| ||| |||| | ||||||||||||| |||
Sbjct: 5284 gatatatggggaagacaaagtgtcgatccagctagtacttacgaaacacgcggaacattt 5343
Query: 861 tttgtaaggtgcc 873
||| ||||||||
Sbjct: 5344 cttgaaaggtgcc 5356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5048
Number of Sequences: 1807
Number of extensions: 5048
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)