BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB02RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig782 561 e-160
3x_Contig879 525 e-149
>3x_Contig782
Length = 2529
Score = 561 bits (283), Expect = e-160
Identities = 316/325 (97%), Gaps = 2/325 (0%)
Strand = Plus / Plus
Query: 44 gctttagttgatcaatgaactctatcgtgattctgtcacgcaaatgttcagtaatatctt 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2205 gctttagttgatcaatgaactctaacgtgattctgtcacgcaaatgttcagtaatatctt 2264
Query: 104 ctctttgtaacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2265 ctctttgtaacatatgcgtaaagaaccaacagagccgaacatcgaatatctccgaatgcg 2324
Query: 164 atctcaattcatctaaaagttgctcaactgggatagttgggcaagcaaataac-ncttta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 2325 atctcaattcatctaaaagttgctcaactgggatagttgggcaagcaaataacttcataa 2384
Query: 223 tattcattgacaagttttcaaaagttgaaacagacgatgtatcaacaaatggatttgata 282
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 2385 tattcattgacaagttttcaaaagttgaaacagacgatgtttcaacaaatgggtttgata 2444
Query: 283 tagcattcataatcaaatcttctagagtcaatgaatcgatatctccataatatacttgta 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2445 tagcattcataatcaaatcttctagagtcaatgaatcgatatctncataatatacttgta 2504
Query: 343 aacctaa-attcactaaccgcgaaa 366
||||||| |||||||||||||||||
Sbjct: 2505 aacctaanattcactaaccgcgaaa 2529
>3x_Contig879
Length = 2855
Score = 525 bits (265), Expect = e-149
Identities = 452/499 (90%), Gaps = 14/499 (2%)
Strand = Plus / Minus
Query: 443 tggatccactatagagcctaaagatttccatttagttaactgtagttgcgcgatttcacg 502
|||||| ||||| |||| |||||||||| |||||||||| |||||||| | ||||| |||
Sbjct: 2671 tggatcaactatggagcataaagatttcaatttagttaaatgtagttgagagatttaacg 2612
Query: 503 aacaattggatcattggaccccagtaacgttatcaaaacagataaatgtttgtttttgga 562
||||||||||| |||||| ||||| ||||| |||| |||||||||||||||||||||
Sbjct: 2611 aacaattggataattggaaaaaagtaaagttataaaaaaagataaatgtttgtttttgga 2552
Query: 563 aattatagccgtctttgaagcatttacaatgtcgttgacagagaagaaaagaagtatttt 622
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2551 aattatagccgtctttgaagcatttacaatgtcgttgacagagaggaaaagaagtatttt 2492
Query: 623 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 ctgaatatcagaagcagtggatagcatagaatcaatctcagcccttgtttcatcgactat 2432
Query: 683 tcatccacagagctttgcatgcccgttgttttttaattag-acttttttaacttctgggg 741
|||||||||||||||||||| ||||||||||||||| || ||||||| ||||||| |||
Sbjct: 2431 ccatccacagagctttgcatg-ccgttgttttttaataagaactttttcaacttct-ggg 2374
Query: 742 gaattgacagcgtatggaaggggaaaaaggatcaaacaaaatggatgctaacttcaatat 801
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 2373 gaattgacagcgtatggaa-gggaaagaggatcaaacaaaatggatgctaacttcaatat 2315
Query: 802 tttgtcttcattttgggacatcaggattttgcggaggcaggatttttgaaactgtaaggg 861
|||||||||| |||||||||||| || | ||| || ||| |||| | | |||||||| ||
Sbjct: 2314 tttgtcttca-tttgggacatca-gaatatgcagaagcaagattatcg-aactgtaa-gg 2259
Query: 862 aacatttttccaacaagaaggataaccatttgggttcggaagttgactatggatttggtt 921
|||| ||| |||||||| ||||||||||||||| || | |||||||||||||| || |
Sbjct: 2258 aaca-tttcccaacaag-aggataaccatttgg--tctggagttgactatggatgtg--t 2205
Query: 922 tcaaataagaggcgaacac 940
||| |||||||||||||||
Sbjct: 2204 tcagataagaggcgaacac 2186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8097
Number of Sequences: 1807
Number of extensions: 8097
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)