BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB03FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig681 1516 0.0
>3x_Contig681
Length = 3369
Score = 1516 bits (765), Expect = 0.0
Identities = 813/824 (98%), Gaps = 4/824 (0%)
Strand = Plus / Plus
Query: 86 tacgggacgccaccagcaatgttctctttagcaaaagcgtcaagaggcttcaaacattat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 tacgggacgccaccagcaatgttctctttagcaaaagcgtcaagaggcttcaaacattat 1957
Query: 146 acaagatggatggaataagaatggacggtcaccggagggttagcagatcacagttaaccc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 acaagatggatggaataagaatggacggtcaccggagggttagcagatcacagttaaccc 2017
Query: 206 atatactatttaaataaaggacagatgagtacgaccgttcaatcattgattcgaatagca 265
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 atatactatttaaagaaaggacagatgagtacgaccgttcaatcattgattcgaatagca 2077
Query: 266 tatatgccctc-tttaaaaaggataatgtaaatttaacaaaaaaaatggttttaattgaa 324
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 tatatgccctcctttaaaaaggataatgtaaatttaacaaaaaaaatggttttaattgaa 2137
Query: 325 gaaaggcggctcaatgactatcttgccgatgacagatatcagaaggaggctggatatgca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 gaaaggcggctcaatgactatcttgccgatgacagatatcagaaggaggctggatatgca 2197
Query: 385 tgcgcattgagagtaattagaaaggttgcatccacagcatacttaagagacttcaaatct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 tgcgcattgagagtaattagaaaggttgcatccacagcatacttaagagacttcaaatct 2257
Query: 445 acaagagaatggtatctcgctgcaagagaaaatgtgaagcgacaacgaatccagttgcta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 acaagagaatggtatctcgctgcaagagaaaatgtgaagcgacaacgaatccagttgcta 2317
Query: 505 cctgtgtttgaacctatcgactttctaccttcattgaaattgaaacttcaagacattcat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 cctgtgtttgaacctatcgactttctaccttcattgaaattgaaacttcaagacattcat 2377
Query: 565 aaacatagagccgccctgccgcattctgacacggctagcacgataatatcaacacaagat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 aaacatagagccgccctgccgcattctgacacggctagcacgataatatcaacacaagat 2437
Query: 625 ctcaatgtcgatgttgaaagtgaaggatctgatcaatttgctttagataagaacagggct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 ctcaatgtcgatgttgaaagtgaaggatctgatcaatttgctttagataagaacagggct 2497
Query: 685 gttctacagttactccgaaaggacgaacgtattttgaatatatggaatgcttctcatatt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2498 gttctacagttactccgaaaggacgaacgtattttgaatatatggaatgcttctcatatt 2557
Query: 745 atcggtctattggccaaacctggcgtattggtattaa-cacttcttctttatacttcatc 803
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2558 atcggtctattggccaaacctggcgtattggtattaaccacttcttctttatacttcatc 2617
Query: 804 tctgga-gttattatgattcaaatga-aaaaaagtatggnctttggatgctcttccggag 861
|||||| ||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 2618 tctggatgttattatgattcaaatgagaaaaaagtattggacttggatgctcttccggag 2677
Query: 862 attctgagagacttgacaattgattcattgcccgctgacctcat 905
||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2678 attctgagagacttgacaattgattcactgtccgctgacctcat 2721
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6954
Number of Sequences: 1807
Number of extensions: 6954
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)