BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig958 1407 0.0
>3x_Contig958
Length = 3798
Score = 1407 bits (710), Expect = 0.0
Identities = 743/754 (98%)
Strand = Plus / Plus
Query: 86 agatagtgacagtgaagatgcagaagccatactatccgatgatgaaccacccacttatga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 agatagtgacagtgaagatgcagaagccatactatccgatgatgaaccacccacttatga 1375
Query: 146 agaaattacacctctcatgtaatattacacaaatatttatgtacataataataatatttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 agaaattacacctctcatgtaatattacacaaatatttatgtacataataataatatttc 1435
Query: 206 aagttgttctgatttacgcctctcgcaaaaaaccatttcagatacggagaactccccttg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 aagttgttctgatttacgcctctcgcaaaaaaccatttcagatacggagaactccccttg 1495
Query: 266 cttgattcaatccgatagaactgatcattctaagtcccgtgccaccaaaggggaaatagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 cttgattcaatccgatagaactgatcattctaagtcccgtgccaccaaaggggaaatagg 1555
Query: 326 atattgcgtagtaaatgacagcgatcaactctagaattgcacaaggaatcgtcaaaagcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 atattgcgtagtaaatgacagcgatcaactctagaattgcacaaggaatcgtcaaaagcg 1615
Query: 386 tactcttggtaaatgctgcaaagtaaatggtcaaaaagcaagagacaaagaaaaatactg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 tactcttggtaaatgctgcaaagtaaatggtcaaaaagcaagagacaaagaaaaatactg 1675
Query: 446 tgaatggtaaacgctcccttgatgttaagtgtctcatgtatgcaacaggtccttgcaata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 tgaatggtaaacgctcccttgatgttaagtgtctcatgtatgcaacaggtccttgcaata 1735
Query: 506 caccaaatgcaaagatgaacaacaaagatcccatcgaccaaagtagaccgaactttcttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 caccaaatgcaaagatgaacaacaaagatcccatcgaccaaagtagaccgaactttcttg 1795
Query: 566 gttgtacagcaagcacagggaacaaaaacacacaaatggtgaagcacgctacagcaccca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 gttgtacagcaagcacagggaacaaaaacacacaaatggtgaagcacgctacagcaccca 1855
Query: 626 atatgaaacaaacgaatagagaaagtctttcagtcctacttaacgaaaaccattctggct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 atatgaaacaaacgaatagagaaagtctttcagtcctacttaacgaaaaccattctggct 1915
Query: 686 ctggatttgccggtaggtcttgttgcgttaacggtagtctctgatacacatcttgggctc 745
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 ctggatttgccgtaaggtcttgttgcgttaacggtagtctctgatacacatcttgggctc 1975
Query: 746 ttttatttatcgagtttgcccaacttgcgaaattcgtctttcgcccttcattgaatccct 805
||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 1976 tttcatttatcgagtctgcccaacttgcgaatatcgtcttcgccccttcattgaatccct 2035
Query: 806 gggaatgggcatttcgggattcattccatttatt 839
|||||||||||||||| |||||||||||| ||||
Sbjct: 2036 gggaatgggcatttcgtgattcattccatctatt 2069
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6499
Number of Sequences: 1807
Number of extensions: 6499
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)