BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB04RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1578 1338 0.0
>3x_Contig1578
Length = 13178
Score = 1338 bits (675), Expect = 0.0
Identities = 717/726 (98%), Gaps = 4/726 (0%)
Strand = Plus / Minus
Query: 48 tgctatcatttcttacgttcacgggatgttctcagtcaatctcccctgtatctacaatat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11125 tgctatcatttcttacgttcacgggatgttctcagtcaatctcccctgtatctacaatat 11066
Query: 108 atatctacaatgttcatactatttttatccgctatttgcggaactgacaaaacatgcatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11065 atatctacaatgttcatactatttttatccgctatttgcggaactgacaaaacatgcatt 11006
Query: 168 atttccatgtatgcacaattagacgcttccgtctcctgtattttcgaccctctttttttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11005 atttccatgtatgcacaattagacgcttccgtctcctgtattttcgaccctctttttttt 10946
Query: 228 tgaaatttttggtttttcatccgcatttcttttttttttgctactgagatgctgctcgag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10945 tgaaatttttggtttttcatccgcatttcttttttttttgctactgagatgctgctcgag 10886
Query: 288 gacggaagactacatctactgcgcatttgacgcatctcgaacggatgttatgctgttttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10885 gacggaagactacatctactgcgcatttgacgcatctcgaacggatgttatgctgttttt 10826
Query: 348 aggctattcaaacggcactgccgtgtgtcaatagagagttggcgttcgaccgaccaattt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10825 aggctattcaaacggcactgccgtgtgtcaatagagagttggcgttcgaccgaccaattt 10766
Query: 408 acgtactagcatccattcaaattaaagttgtttcgatgcaaagcgggatgaaaggttcat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10765 acgtactagcatccattcaaattaaagttgtttcgatgcaaagcgggatgaaaggttcat 10706
Query: 468 ccgacccaagaatgagcattgttttcccgtttacaactggctatagttcgatatatcctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10705 ccgacccaagaatgagcattgttttcccgtttacaactggctatagttcgatatatcctt 10646
Query: 528 gtgtctaatgttcatcactctcagttaataatcaagatacacttcatctcgatatagttt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10645 gtgtctaatgttcatcactctcagttaataatcaagatacacttcatctcgatatagttt 10586
Query: 588 ggaataaccaattaagaaatgttatgcctctccgttt-agatcttgattt-gtgtgtggc 645
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 10585 ggaataaccaattaagaaatgttatgcctctccgtttaagatcttgatttggtgtgtggc 10526
Query: 646 atctcatgtttctattgttgaagctccataggtgctatcagntttacttgtatactgtgt 705
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10525 atctcatggttctattgttgaagctccataggtgctatcagttttacttgtatactgtgt 10466
Query: 706 tcacacctcatctatgctgcgtta-cacatgttcttggtgtttttggtggaaagagttcc 764
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||
Sbjct: 10465 tcacacctcatctatgctgcgttaccacatgttcttggtg-ttctggtggaaagatgtcc 10407
Query: 765 cgctgt 770
||||||
Sbjct: 10406 cgctgt 10401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,016
Number of Sequences: 1807
Number of extensions: 23016
Number of successful extensions: 337
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)