BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB06FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1471 0.0
>3x_Contig1718
Length = 19496
Score = 1471 bits (742), Expect = 0.0
Identities = 819/838 (97%), Gaps = 5/838 (0%)
Strand = Plus / Plus
Query: 86 ttgactgaaagttgattcgtctgtataccatatcttccatcgtatacaaccattaatgaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13211 ttgactgaaagttgattcgtctgtataccatatcttccatcgtatacaaccattaatgaa 13270
Query: 146 acattctacaatcataaattgagtcatagcactcaaatatggttccgacttgtgatccaa 205
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 13271 acattctacaatcataaattgagtcagagcactcaaatatggttccgacttgtgatccaa 13330
Query: 206 ataagtagatctgttatcttgttgtccaaattgagatccaaagtatttattaagtctctc 265
||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13331 ataagtagaactgagaacttgttgtccaaattgagatccaaagtatttattaagtctctc 13390
Query: 266 acataaccaatcatatgcaaagtctagttgaacacatgatatgaggcggataatatccct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13391 acataaccaatcatatgcaaagtctagttgaacacatgatatgaggcggataatatccct 13450
Query: 326 gattctctttctatagcttgaacagtagttctcgtattcagctgtcgactggaagtccac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13451 gattctctttctatagcttgaacagtagttctcgtattcagctgtcgactggaagtccac 13510
Query: 386 ttcaacgaaattcttggagacatgatcttcaatctgttcgtagtaaatcaaagcatttcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13511 ttcaacgaaattcttggagacatgatcttcaatctgttcgtagtaaatcaaagcatttcc 13570
Query: 446 agcaaactccaacaagtcgggaataaccaatttctctaaaattggtaaaaattcatcgtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13571 agcaaactccaacaagtcgggaataaccaatttctctaaaattggtaaaaattcatcgtt 13630
Query: 506 tctcaagcatgcacaccagagatctaaggaaagcccgctgacaatcaaactgggattata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13631 tctcaagcatgcacaccagagatctaaggaaagcccgctgacaatcaaactgggattata 13690
Query: 566 agtagtttttaaaacaagcttcatatatgtttcgatgttttgtagatcagatattttgag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13691 agtagtttttaaaacaagcttcatatatgtttcgatgttttgtagatcagatattttgag 13750
Query: 626 cacgcatgtgtataaacaggttatcatatccacaaacttcttcataattggatatttggc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13751 cacgcatgtgtataaacaggttatcatatccacaaacttcttcataattggatatttggc 13810
Query: 686 ctcatcgataccctcaattggatcgaaaagcatttgtgaatatacagtgtccattaaacc 745
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 13811 ctcatcgataccctcaattggatcgaaaagcaattgtgaatatacagtgtccattaaacc 13870
Query: 746 catactgtcaaatacacgattcacaatcatgttgtaatgatctgtgttactgtatggacg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13871 catactgtcaaatacacgattcacaatcatgttgtaatgatctgtgttactgtatggacg 13930
Query: 806 gttgaggag-atatggatagaatctagtgccataaattgggctttgggtatgttctttgt 864
| ||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 13931 ggtgaggagaatatggatagaatctagtgcaatagattgggctttgggtatgtcctttgt 13990
Query: 865 t-agcaccctaac-atgcaga-aatactgcatgggataccataac-tcgctcaaaggc 918
| ||||||||||| ||||||| ||||| ||| |||||| ||||| ||||||||||||
Sbjct: 13991 taagcaccctaacaatgcagagaatacgtcattggatacaataacttcgctcaaaggc 14048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5932
Number of Sequences: 1807
Number of extensions: 5932
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)