BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1279 0.0
>3x_Contig1739
Length = 22061
Score = 1279 bits (645), Expect = 0.0
Identities = 718/737 (97%), Gaps = 4/737 (0%)
Strand = Plus / Plus
Query: 47 ctaatcgctgctaattttaattctgtcaaatgtccttgacatggatttaaatccacccca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 ctaatcgctgctaattttaattctgtcaaatgtccttgacatggatttaaatccacccca 2812
Query: 107 tgaattctcttcggtggattaggcaaagtggcatagtgcaaaatattatcaccagcactg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2813 tgaattctcttcggtggattaggcaaagtggcatagtgcaaaatattatcaccagcactg 2872
Query: 167 gtaatagccaaaatggtatcttctggttgaatattaagaatgttaacatcttctctagga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2873 gtaatagccaaaatggtatcttctggttgaatattaagaatgttaacatcttctctagga 2932
Query: 227 tcttcccatgtgaatgcgtatatataactgttcttaaattggctgtactcagggttcact 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2933 tcttcccatgtgaatgcgtatatataactgttcttaaattggctgtactcagggttcact 2992
Query: 287 tcatcatagtacactctccaatgctccttttgatagaacagagaaggatatggtaaacct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2993 tcatcatagtacactctccaatgctccttttgatagaacagagaaggatatggtaaacct 3052
Query: 347 tttttagaattttctagtgctgcaatcatagctttggtcattggctgagcgttagaggaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3053 tttttagaattttctagtgctgcaatcatagctttggtcattggctgagcgttagaggaa 3112
Query: 407 gctgacgtggttataggtgcgaggtatggagatgttggtgcaagttcaacaaatctagct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3113 gctgacgtggttataggtgcgaggtatggagatgttggtgcaagttcaacaaatctagct 3172
Query: 467 tgaagatgttgttcgtggtctttattgcaacccaaccaaatgtagtagggaattttacca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3173 tgaagatgttgttcgtggtctttattgcaacccaaccaaatgtagtagggaattttacca 3232
Query: 527 agcttgtagttataacaattcaatgattttgattgtcccgaatctatattcaagatattc 586
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3233 agcttgtagttataacaattcaatga-tttgattgtcccgaatctatattcaagatattc 3291
Query: 587 tcttctagctggat-caaaaacactttgtcgaattc-aaccacaatctccagaatgtacg 644
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3292 tcttctagctggatccaaaaacactttgtcgaattcaaaccacaatctccagaatgtacg 3351
Query: 645 gaatagccaaagtatatgtctgttaactagaccacccaagttgttggtttctttcgactt 704
|||||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct: 3352 gaatagccaaggtatatgtctgttaactagaccacccaaagtgttgg-ttcttccgacta 3410
Query: 705 gcctagattcattagggacaccaaaattaccccaccaaatgatccccttcttagcatccc 764
|| |||||||||||| ||||||||||| | | ||| ||||||| || ||||||||||||
Sbjct: 3411 gcatagattcattagtgacaccaaaatcaacacacgaaatgataccattcttagcatcca 3470
Query: 765 attaagatactgcgtga 781
|| ||||||||||||||
Sbjct: 3471 ataaagatactgcgtga 3487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,134
Number of Sequences: 1807
Number of extensions: 12134
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)