BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB07FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1300 0.0
>3x_Contig1640
Length = 15521
Score = 1300 bits (656), Expect = 0.0
Identities = 753/779 (96%), Gaps = 5/779 (0%)
Strand = Plus / Plus
Query: 87 cttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatccagac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatccagac 525
Query: 147 atcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtgaaaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtgaaaag 585
Query: 207 aaaagcaaactaagcagcaattcctcatctacaagtaacaataatggtacaagcggtgga 266
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 aaaagcaaactaagcagcaattcctcatctacaagtaccaataatggtacaagcggtgga 645
Query: 267 gaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacgacggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacgacggt 705
Query: 327 gtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattatatgat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattatatgat 765
Query: 387 gcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgagtatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgagtatt 825
Query: 447 gagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtgacaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtgacaaa 885
Query: 507 tacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatagaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatagaatt 945
Query: 567 acgaatggagaagtatcagccaaacatttagtgactgctgatcctnaggacttggcaccg 626
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 946 acgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggcaccg 1005
Query: 627 gaacatttaaagaagaaaattgaggaaattgagaaacagaatttgtttattgcacaaggt 686
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1006 gaacatttaaagaagaaaattgaggaaattgagaaacagaatttgtttaatgcacaaggt 1065
Query: 687 gcaactgtagaaagatcacgtacaggatagatttccatgtggcaaatgtaaacaaagaaa 746
|||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||||
Sbjct: 1066 gcaactgtagaaagatca-gtaacagatagattccaatgtggcaaatgtaaacaaagaaa 1124
Query: 747 ggt-ttatactaccaacttccaacaggatctgcggatgaacctcttactactttttggtc 805
|| | |||||||||||| | |||| ||||||||||||||||||||||||||||||| |
Sbjct: 1125 agtatcatactaccaactacaaacaagatctgcggatgaacctcttactactttttgtac 1184
Query: 806 atgtgaagaattgccgctatagagggcagtttctcgtaattgaaaattctcactttgaa 864
||||| |||||||| | ||||| || || |||||||| ||| ||||||||||||||||
Sbjct: 1185 atgtg-agaattgcggtaatagatggaag-ttctcgtagttg-aaattctcactttgaa 1240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7214
Number of Sequences: 1807
Number of extensions: 7214
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)