BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB07RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 1172 0.0
>3x_Contig1500
Length = 9720
Score = 1172 bits (591), Expect = 0.0
Identities = 654/666 (98%), Gaps = 7/666 (1%)
Strand = Plus / Plus
Query: 47 caatctttagtcgatgacttctgtctgcgtggcttttcca-tatttttccgatccatcaa 105
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 475 caatctttagtcgatgacttctgtctgcgtggcttttccaatatttttccgatccatcaa 534
Query: 106 catctagtctgtgcccatctagggccacacggaagttcttttcttttgtgacctaatccg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catctagtctgtgcccatctagggccacacggaagttcttttcttttgtgacctaatccg 594
Query: 166 ggtaaaccaatagaattagcgtatttgtttctcaccagcgttttcttatgaatggaatgt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggtaaaccaatagaattagcgtatttgtttctcaccagcgttttcttatgaatggaatgt 654
Query: 226 ctgggtgtctggaacaactcttttttttctcctgggtattcaagcaaattacataatcgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctgggtgtctggaacaactcttttttttctcctgggtattcaagcaaattacataatcgt 714
Query: 286 tgggtacaggttacttttttactttgttcggtgtggattatgtaactcgaaaacaatttt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgggtacaggttacttttttactttgttcggtgtggattatgtaactcgaaaacaatttt 774
Query: 346 tctttccgagtcatgttctttctttcttcctttctttcttttcatttgctgtccggcgtc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tctttccgagtcatgttctttctttcttcctttctttcttttcatttgctgtccggcgtc 834
Query: 406 agagctactgacagttgagtcttcgacctgaacatccgatagatattangtaataaatag 465
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 835 agagctactgacagttgagtcttcgacctgaacatccgatagatattaggtaataaatag 894
Query: 466 ctgttaatgcatcagtatgaaccatacagcgttcggtaaaccgcatactacgccctttta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ctgttaatgcatcagtatgaaccatacagcgttcggtaaaccgcatactacgccctttta 954
Query: 526 gttaaaagaaag-atgacatgagaatgtgtgaattatg-tgtgcgcttttat-caatgat 582
|||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 955 gttaaaagaaagaatgacatgagaatgtgtgaattatgttgtgcgcttttatacaatgat 1014
Query: 583 caagcaccatat-ttaagttctagaacggatcaaagagtgcactgctaacgaccatcatt 641
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 caagcaccatatcttaagttctagaacggatcaaagagtgcactgctaacgaccatcatt 1074
Query: 642 tggacgaacttccttggttt-catgatggccgtgtagtaacgattgaagtctttcttatt 700
||||||||| | |||||||| ||||||||| ||||||||||||| |||||||||| ||||
Sbjct: 1075 tggacgaac-tacttggtttccatgatggcagtgtagtaacgatggaagtctttcctatt 1133
Query: 701 ggaata 706
||||||
Sbjct: 1134 ggaata 1139
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8002
Number of Sequences: 1807
Number of extensions: 8002
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)