BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB08FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1179 0.0
>3x_Contig1775
Length = 26320
Score = 1179 bits (595), Expect = 0.0
Identities = 637/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Plus
Query: 87 ggctgtcactgaagccagaagattgggaccaaccattctaatgtacggtaccttcatcgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12939 ggctgtcactgaagccagaagattgggaccaaccattctaatgtacggtaccttcatcgt 12998
Query: 147 ttctgtgttaggctggccattccttgtcagaaaggctgatatggatattggaatccacgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12999 ttctgtgttaggctggccattccttgtcagaaaggctgatatggatattggaatccacgg 13058
Query: 207 gatgaagcaataaatattgtgatgaaagttttcaaaacctcatcagagatacaaatatta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13059 gatgaagcaataaatattgtgatgaaagttttcaaaacctcatcagagatacaaatatta 13118
Query: 267 tattgcattggcagtggctcatatataaacggtttaccaacttcaagatgagctaatatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13119 tattgcattggcagtggctcatatataaacggtttaccaacttcaagatgagctaatatg 13178
Query: 327 tcaaccttattatcacctatattcttcgcaattccatgctatccatgaaaatgtacaata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13179 tcaaccttattatcacctatattcttcgcaattccatgctatccatgaaaatgtacaata 13238
Query: 387 agcaaagaaagaaaaaataaattcaagaactacctcaacagttaattccactactttaca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13239 agcaaagaaagaaaaaataaattcaagaactacctcaacagttaattccactactttaca 13298
Query: 447 ctatcaaattgcgctacagatatgtaaatacagatatgtaaattaataatgatttaaatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13299 ctatcaaattgcgctacagatatgtaaatacagatatgtaaattaataatgatttaaatg 13358
Query: 507 acattcagaaaacctacctcacgttccgtactaaccttctttacagtcttttgtttgctc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13359 acattcagaaaacctacctcacgttccgtactaaccttctttacagtcttttgtttgctc 13418
Query: 567 tcaccattttttgatgcgtttttttacaagctgcgtcagtttgcttaggtaatccagaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13419 tcaccattttttgatgcgtttttttacaagctgcgtcagtttgcttaggtaatccagaaa 13478
Query: 627 ttggcatttctcgtacaccgcatacttaatgcatgttatgtcnaaggttggatagaatgc 686
|||||| ||||||||||||||||||||||||||||||||||| ||| |||| || ||||
Sbjct: 13479 ttggcaattctcgtacaccgcatacttaatgcatgttatgtcg-agggtggagaggatgc 13537
Query: 687 aggggtcagccttcacaaccagagtgagatcttattcagaaagact 732
||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 13538 agggg-cagcc-tcacaaccagagtgaga-cttattcagaaagact 13580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7721
Number of Sequences: 1807
Number of extensions: 7721
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)