BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB09FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1544 1227 0.0
>3x_Contig1544
Length = 10626
Score = 1227 bits (619), Expect = 0.0
Identities = 702/723 (97%), Gaps = 5/723 (0%)
Strand = Plus / Minus
Query: 86 taaccaagagtattcttccccaagcttaatctgcatgcagagttcccctatgaactttgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 taaccaagagtattcttccccaagcttaatctgcatgcagagttcccctatgaactttgg 2644
Query: 146 gcctgtttcctttaacatacttttggagaaacggtctttgtttcattactcattgccaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2643 gcctgtttcctttaacatacttttggagaaacggtctttgtttcattactcattgccaag 2584
Query: 206 gattatgtcctaatttctatattcttctccactttaagtcagtttgatccagatataaag 265
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2583 gattatgtccgaagttctatattcttctccactttaagtcagtttgatccagatataaag 2524
Query: 266 atatataagtaaacatatatggattataagtatgtccccatgatgcttgatggtgataat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2523 atatataagtaaacatatatggattataagtatgtccccatgatgcttgatggtgataat 2464
Query: 326 cagttgaatgtgtaatctcttagggcacattattgatatcaggttacaactcccctaata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2463 cagttgaatgtgtaatctcttagggcacattattgatatcaggttacaactcccctaata 2404
Query: 386 attcagtaataatatgataaaatcgacgaaaagggtgactgcagctgtaccaagaactga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 attcagtaataatatgataaaatcgacgaaaagggtgactgcagctgtaccaagaactga 2344
Query: 446 ttaccggagtacgttgagtgggaccgacgttcttgagattttctacgatgtctacgaaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 ttaccggagtacgttgagtgggaccgacgttcttgagattttctacgatgtctacgaaac 2284
Query: 506 tgaggatcttagagctgttcccgaggttaacatcgtgtttctacatggaacgggtatgac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2283 tgaggatcttagagctgttcccgaggttaacatcgtgtttctacatggaacgggtatgac 2224
Query: 566 aaagagcatatgggaatggtacgtgaaatattttcacaaacagatccaagcgaaccctg- 624
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2223 aaagagcatatgggaatggtacgtgaaatatttccacaaacagatccaagcgaaccctga 2164
Query: 625 aaaataccagtataagcttgggaagctaatagcattggaccaagtgaaccatggtgattc 684
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2163 aaaataccagtataagcttgggaagctaatagcagtggaccaagtgaaccatggtgattc 2104
Query: 685 ctgtgttgccaacaatgggaaactttgctctattatccattgaatcgatgggttctaagg 744
||||||||||||| | ||||||||| ||||||| ||||||| |||||| ||||||||||
Sbjct: 2103 ctgtgttgccaacgaggggaaacttggctctatattccattggatcgat-ggttctaagg 2045
Query: 745 at-ttattaaggaatgttgacgttgaattaaatccttccaaacaaaacag-ttcaacgta 802
|| |||| ||| ||| ||||||||| ||||||||| | ||||||||||| |||||||||
Sbjct: 2044 atattatcaagatatg-tgacgttgagttaaatcctccaaaacaaaacagtttcaacgta 1986
Query: 803 ctg 805
|||
Sbjct: 1985 ctg 1983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6901
Number of Sequences: 1807
Number of extensions: 6901
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)