BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB10FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1148 0.0
>3x_Contig1726
Length = 20144
Score = 1148 bits (579), Expect = 0.0
Identities = 664/682 (97%), Gaps = 9/682 (1%)
Strand = Plus / Plus
Query: 90 gacttcaagctaattgacaataagctaatacatgtaattaacggtaaaaagctaatttac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11399 gacttcaagctaattgacaataagctaatacatgtaattaacggtaaaaagctaatttac 11458
Query: 150 tgtgctggtgaaattttagtgttatcttacgatgagcagcaactatctctagagcatatc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11459 tgtgctggtgaaattttagtgttatcttacgatgagcagcaactatctctagagcatatc 11518
Query: 210 cttttcgatcatgaaaatgtgaaatctcaaaatatagcattgaagggcccatccggtgtt 269
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11519 cttttcgatcaggaaaatgtgaaatctcaaaatatagcattgaagggcccatccggtgtt 11578
Query: 270 tttaaagatttagtaatgtttgaccatttgcttgtagttgcgtttgagaaatgtaccatt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11579 tttaaagatttagtaatgtttgaccatttgcttgtagttgcgtttgagaaatgtaccatt 11638
Query: 330 tactacgacgtctttgataagattttagtcagtgaatatccggccataacacacgtttct 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11639 tactacgacgtctttgataagattttagtcagtgaatatccggccataacacacgtttct 11698
Query: 390 tgcatttcagccatttctcccgatactatggtattgttgaccgaaaacaactcagttatc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11699 tgcatttcagccatttctcccgatactatggtattgttgaccgaaaacaactcagttatc 11758
Query: 450 tttatgagtaagtggggaaatatattattatcaatcccaatcgatgagagccaattcaaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11759 tttatgagtaagtggggaaatatattattatcaatcccaatcgatgagagccaattcaaa 11818
Query: 510 atcctgcattgctcgcttatagataccaagctattaataagtggatcgaatggtactcta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11819 atcctgcattgctcgcttatagataccaagctattaataagtggatcgaatggtactcta 11878
Query: 570 cagctttgggatctttgg--aaaagttagacagttctctctccaatttcagaac-agtca 626
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 11879 cagctttgggatctttggaaaaaagttagacagttctctctccaatttcagaacaagtca 11938
Query: 627 agtctt-actttactc-atgataac-atgatattctactttacttttctatgagtgattc 683
|||||| ||||||||| |||||||| ||||||| |||||||||| | |||||||||||||
Sbjct: 11939 agtcttcactttactcaatgataacaatgatatactactttactctcctatgagtgattc 11998
Query: 684 c-caaatacgagcac-tttcaaac-atttagttaccgactaaaacagttaacaacacctt 740
| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| | |
Sbjct: 11999 cacaaatacgagcacttttcaaacaattaagttaccgactaaaacagttaacaacaacat 12058
Query: 741 tattacttgtaagacaaatggg 762
|| ||| |||||||||||||||
Sbjct: 12059 tagtacctgtaagacaaatggg 12080
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7687
Number of Sequences: 1807
Number of extensions: 7687
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)