BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZB10RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1168 1328 0.0
>3x_Contig1168
Length = 4574
Score = 1328 bits (670), Expect = 0.0
Identities = 799/826 (96%), Gaps = 12/826 (1%)
Strand = Plus / Minus
Query: 36 gctttatagacc-cagtgtctggggtttttaaaacatttctcaaaacatcaagatgataa 94
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4401 gctttatagaccacagtgtctggggtttttaaaacatttctcaaaacatcaagatgataa 4342
Query: 95 gtaaatagcgccaaatcgtccatattgccaatcttttcgttatttataaactcaaattga 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4341 gtaaatagcgccaaatcgtccatattgccaatcttttcgttatttataaactcaaattga 4282
Query: 155 agggggttttcaaccaaaagttcaaagaacttgtttccggattcaccagaaatgatagat 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4281 agggggttttcaaccaaaagttcaaagaacttgtttccggattcaccagaaatgatagat 4222
Query: 215 accacccattcatgcacataccagtagttagaattcttttcatcagaaagttcgtccaaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4221 accacccattcatgcacataccagtagttagaattcttttcatcagaaagttcgtccaaa 4162
Query: 275 gctagggacaaaggtctttttataatatcaaagttacctgctagatgagtccagaggcag 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4161 gctagggacaaaggtctttttataatatcaaagttacctgctagatgagtccagaggcag 4102
Query: 335 tctagaacaactagacgattgttaatgtcgcaatcccccaaataaacagaagctaagcag 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4101 tctagaacaactagacgattgttaatgtcgcaatcccccaaataaacagaagctaagcag 4042
Query: 395 ctttcaattcttgacgatggaacatgtcttgttatgactttgagcatttcgactgcg-tc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4041 ctttcaattcttgacgatggaacatgtcttgttatgactttgagcatttcgactgcgctc 3982
Query: 454 aatttgtttattatgatctaagagtaatgaccacagccctttcataattatctttaatag 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3981 aatttgtttattatgatctaagagtaatgaccacagccctttcataattatctttaatag 3922
Query: 514 tcgcatcgaatccaatatcggtaaattacggaacaaatatttagtgtaaatctcaacaat 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3921 tcgcatcgaatccaatatcggtaaattacggaacaaatatttagtgtaaatctcaacaat 3862
Query: 574 tccttgtagtgactgttcaggagcactttcgattgcatcattttgttcaaagatacactc 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3861 tccttgtagtgactgttcaggagcactttcgattgcatcattttgttcaaagatacactc 3802
Query: 634 tatcaaatcagtatctgaccacttcaccactttagccttcttctgatacatcatactgct 693
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 3801 tatcaaatcagtatctgaccacttcaccacttcag-cttcttctgatacatcatactgct 3743
Query: 694 cgggggattatttttcatgaattatacaaaccaatttcgaaatatcatttatgtttttga 753
| |||||||| ||| |||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 3742 c-ggggatta-tttcaatgaataatacaaa-caatttcgaaatatcatttatg-ttttga 3687
Query: 754 tattcttcgaatatttttcgatcaacagtaaatgcccttttattagtgattaaaaagatt 813
|| |||||||||| ||||||||||||||||||||| | | ||| |||||||||||| ||
Sbjct: 3686 ta-tcttcgaata-ttttcgatcaacagtaaatgcac-tctataagtgattaaaaaagtt 3630
Query: 814 a-attttcccttttgtaaggggggacttaaatcagatgacgaattt 858
| || | || | ||| || || ||||||||||||||||||||||||
Sbjct: 3629 agatctgccgtattg-aaaggaggacttaaatcagatgacgaattt 3585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8793
Number of Sequences: 1807
Number of extensions: 8793
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)