BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC30ZB11RM1.SCF screened BAC_end (960 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1675 1215 0.0 >3x_Contig1675 Length = 13954 Score = 1215 bits (613), Expect = 0.0 Identities = 679/692 (98%), Gaps = 8/692 (1%) Strand = Plus / Plus Query: 48 agtgtcgttttgaacatacatttttgctgcggtaacaaactggttaccagggcctaagat 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11113 agtgtcgttttgaacatacatttttgctgcggtaacaaactggttaccagggcctaagat 11172 Query: 108 ttt-gtccactttaggaacggattcagtaccgtaggccattgcagcaatagcttgtgcac 166 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11173 ttttgtccactttaggaacggattcagtaccgtaggccattgcagcaatagcttgtgcac 11232 Query: 167 cacctgctaatacgatctttgaagcaccgactttacttgcaacataaacaacttcaggag 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11233 cacctgctaatacgatctttgaagcaccgactttacttgcaacataaacaacttcaggag 11292 Query: 227 aaactctaccgtcagactttcttggaggtgatgcgaaaacaatttctttacatccagcaa 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11293 aaactctaccgtcagactttcttggaggtgatgcgaaaacaatttctttacatccagcaa 11352 Query: 287 cctgggccggtacacctaacataagcgcagtacttggtaagattgctgtaccacccggaa 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11353 cctgggccggtacacctaacataagcgcagtacttggtaagattgctgtaccacccggaa 11412 Query: 347 tgtatagaccaaccttttcgataggtctagggaacctagagcagacaacacctggttgag 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11413 tgtatagaccaaccttttcgataggtctagggaacctagagcagacaacacctggttgag 11472 Query: 407 tttcgacatctagggtttcactttgcatttgagcagcgtggaacttttttacattttcaa 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11473 tttcgacatctagggtttcactttgcatttgagcagcgtggaacttttttacattttcaa 11532 Query: 467 tagacaggtccaaagcatctcttagttcatcagtcaatccatcaaggtattcttctggat 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11533 tagacaggtccaaagcatctcttagttcatcagtcaatccatcaaggtattcttctggat 11592 Query: 527 aaggtgccttcaaaactggtgttttctaattggacaccatcgaacttagctgtcaattca 586 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 11593 aaggtgcctccaaaactggtg-tttctaattggacaccatcgaacttagctgtcaattca 11651 Query: 587 actagcgctttgtcaccgttcttaataacgttttcaatgattgggttaaccaggttcata 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11652 actagcgctttgtcaccgttcttaataacgttttcaatgattgggttaaccaggttcata 11711 Query: 647 atttcagctgtttttcttgattggtcttgtgactgcctttttcgacgggaggctttgtaa 706 |||||||||| |||||| |||||||||||||||||| |||||||||| | ||||||| | Sbjct: 11712 atttcagctg-ttttctgaattggtcttgtgactgcc-ttttcgacggca-gctttgtca 11768 Query: 707 ctagcggaaaacaacgttaagaaacaattttt 738 ||||||| |||||||||||| |||||||||| Sbjct: 11769 ctagcgg--aacaacgttaag-aacaattttt 11797 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8159 Number of Sequences: 1807 Number of extensions: 8159 Number of successful extensions: 83 Number of sequences better than 1.0e-20: 1 length of query: 960 length of database: 10,358,551 effective HSP length: 16 effective length of query: 944 effective length of database: 10,329,639 effective search space: 9751179216 effective search space used: 9751179216 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)