BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZB12RM1.SCF screened BAC_end
         (960 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1643                                                        1178   0.0  

>3x_Contig1643 
          Length = 10865

 Score = 1178 bits (594), Expect = 0.0
 Identities = 672/694 (96%), Gaps = 3/694 (0%)
 Strand = Plus / Plus

                                                                        
Query: 51   agcttgaatagcacaccggacttgtttcaagcctttaatttaatcaacagagcagtactt 110
            ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 2091 agcttgaatagcaaaccggacttgaatcaagcctttaatttaatcaacagagcagtactt 2150

                                                                        
Query: 111  tatactctttcgtttgcgtctaccgaactggaatcaatgttctttgaaagcatttcggtg 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 tatactctttcgtttgcgtctaccgaactggaatcaatgttctttgaaagcatttcggtg 2210

                                                                        
Query: 171  cgtggtagcttctttttttt-aatatttttcacactaagcagcttttactatgttatgat 229
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||
Sbjct: 2211 cgtggtagcttcttttttttcaatatttttcacactaagcagcttttactatgggatgat 2270

                                                                        
Query: 230  gaatatcaacaaattctgaatatttttatctatagatatcgatcttgacattaagagtca 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2271 gaatatcaacaaattctgaatatttttatctatagatatcgatcttgacattaagagtca 2330

                                                                        
Query: 290  tactgaatatgttaatgaaactgaaacttgtataaaaacaacccattggtttcataactt 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2331 tactgaatatgttaatgaaactgaaacttgtataaaaacaacccattggtttcataactt 2390

                                                                        
Query: 350  tttttgtttccattaaacagattgagcatcggttagaaattgtgcttctggaaaaagcca 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2391 tttttgtttccattaaacagattgagcatcggttagaaattgtgcttctggaaaaagcca 2450

                                                                        
Query: 410  tttgtggagtaactctataacggaaaaccacgcatattatttaacgatgaatgtcacttt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2451 tttgtggagtaactctataacggaaaaccacgcatattatttaacgatgaaggtcacttt 2510

                                                                        
Query: 470  ttcgcttatgcagaaggcatcaaaacagatagataagttcgcattgtacgttcccaaaag 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2511 ttcgcttatgcagaaggcatcaaaacagatagataagttcgcattgtacgttcccaaaag 2570

                                                                        
Query: 530  cggcgtgtttgctaagggatttaaagtagccactcaagctactggtgtcaagaaaaatgg 589
            |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2571 cggcgtgtttcctaagggattcaaagtagccactcaagctactggtgtcaagaaaaatgg 2630

                                                                        
Query: 590  caatttagatctaggtatcatttagaatgttaatacatctcgtacatcgagtgctgctgc 649
            ||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||
Sbjct: 2631 caatttagatctaggtatcattagaaatgttaatacatctcgtccatcgagtgctgctgc 2690

                                                                        
Query: 650  tgtgtttactacagataaattcaaggctgcttcagtttctgtttttaaagaagtattgga 709
            ||||||||||||| ||||||||||||||||| |||||  ||| | |||||||||||||||
Sbjct: 2691 tgtgtttactacaaataaattcaaggctgctccagttcttgtatctaaagaagtattgga 2750

                                              
Query: 710  agttactgtgcggtgaagaatgttgatgctattg 743
            |||||||| | |||| ||||||||||||||||||
Sbjct: 2751 agttactg-gtggtg-agaatgttgatgctattg 2782


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9138
Number of Sequences: 1807
Number of extensions: 9138
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)