BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZC01FM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig665                                                         1330   0.0  

>3x_Contig665 
          Length = 2101

 Score = 1330 bits (671), Expect = 0.0
 Identities = 708/719 (98%), Gaps = 1/719 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tggaaaccggtatggtctcatgcaacactggtttgttcagtgagtgtaccattccattcg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1632 tggaaaccggtatggtctcatgcaacactggtttgttcagtgagtgtaccattccattcg 1573

                                                                        
Query: 146  gcggtgttaaggaatccggattcggtagagagggatctttgcacggtattgaagactata 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1572 gcggtgttaaggaatccggattcggtagagagggatctttgcacggtattgaagactata 1513

                                                                        
Query: 206  ctgtcatcaagactatcaccatcggaaacttgcctgctccactataaattgatgggcgta 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 ctgtcatcaagactatcaccatcggaaacttgcctgctccactataaattgatgggcgta 1453

                                                                        
Query: 266  actgattataatagtagacgatatgtaccatatgtatatagaaacgtatttccagtagtg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1452 actgattataatagtagacgatatgtaccatatgtatatagaaacgtatttccagtagtg 1393

                                                                        
Query: 326  tagcaatttatatttatcctcggattaagagcggattaacatagcatgatataagttgag 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 tagcaatttatatttatcctcggattaagagcggattaacatagcatgatataagttgag 1333

                                                                        
Query: 386  ttgattattcaacctgagttaaccagttattggaacgagaatccaattgttttctatttg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 ttgattattcaacctgagttaaccagttattggaacgagaatccaattgttttctatttg 1273

                                                                        
Query: 446  atagcctcgtattgactgtttcgttacgcgtagtgattgtgattacatttaacaattgat 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 atagcctcgtattgactgtttcgttacgcgtagtgattgtgattacatttaacaattgat 1213

                                                                        
Query: 506  ttgaaaaaacgttattatggcgtaagtgaaagcttagtaacgatctgcaaagataaagcc 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ttgaaaaaacgttattatggcgtaagtgaaagcttagtaacgatctgcaaagataaagcc 1153

                                                                        
Query: 566  acaacagtaattagctgccactttccagtactcagtgccatccttcacttgagcttagtg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 acaacagtaattagctgccactttccagtactcagtgccatccttcacttgagcttagtg 1093

                                                                        
Query: 626  ggggttcagctgctgttgttttcccaccatggatttatatgaacaacttccgtccagtgg 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ggggttcagctgctgttgttttcccaccatggatttatatgaacaacttccgtccagtgg 1033

                                                                        
Query: 686  tatgattcatcaacccggatacaagttcttactggatgccgctacctttcatgggatcac 745
            ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tatgattcatcaaccggaatacaagttcttactggatgccgctacctttcatgggatcac 973

                                                                       
Query: 746  cttgcttagatttcctattccagtccccattttactggatgaagaaccttaattgatct 804
            | |||||||||||||||| |||||| |||| | ||| |||||||| | ||||| |||||
Sbjct: 972  c-tgcttagatttcctatcccagtcaccatctaacttgatgaagaccattaatagatct 915


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5496
Number of Sequences: 1807
Number of extensions: 5496
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)