BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC01RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1441 0.0
>3x_Contig1698
Length = 21001
Score = 1441 bits (727), Expect = 0.0
Identities = 813/835 (97%), Gaps = 5/835 (0%)
Strand = Plus / Minus
Query: 46 ttcttatacatcacaaaataccttgctgaaaaac-agtgttatctgagagctttgcaaag 104
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12241 ttcttatacatcacaaaataccttgctgaaaaaccagtgttatctgagagctttgcaaag 12182
Query: 105 attcttgaaacaactaagaagtttatgactaaatcatctgcagatttgtggaaattagtg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12181 attcttgaaacaactaagaagtttatgactaaatcatctgcagatttgtggaaattagtg 12122
Query: 165 aagccatccattcttaatgcccagctagaggtagtttcttcaagcatctgggttaagaat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12121 aagccatccattcttaatgcccagctagaggtagtttcttcaagcatctgggttaagaat 12062
Query: 225 gatgttttaatggagtactataatgtgctgttgctgaaagccgataaatcatctgtcaac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12061 gatgttttaatggagtactataatgtgctgttgctgaaagccgataaatcatctgtcaac 12002
Query: 285 tcgaatcagatattacagctacttttaaacaacgattctcttgtttatttgaatgaaaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12001 tcgaatcagatattacagctacttttaaacaacgattctcttgtttatttgaatgaaaag 11942
Query: 345 ggctccaaatatagtaaacttttaactacttcagctctctatcaattattcttcatggac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11941 ggctccaaatatagtaaacttttaactacttcagctctctatcaattattcttcatggac 11882
Query: 405 gttaccgaaaattcaaacattgccctacaaaataaacttttagaattctacagcggatcg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11881 gttaccgaaaattcaaacattgccctacaaaataaacttttagaattctacagcggatcg 11822
Query: 465 ataactacatcagacattcttttgctatccatgttggacaaaatggaatccattgtcgga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11821 ataactacatcagacattcttttgctatccatgttggacaaaatggaatccattgtcgga 11762
Query: 525 caatcatggactaacgagatagtgagttgggaatttgttgattctcttcgcgagattgaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11761 caatcatggactaacgagatagtgagttgggaatttgttgattctcttcgcgagattgaa 11702
Query: 585 attgaattaattgggcctttaaagttgataacaaaggagaaagaagggttggttgttaca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11701 attgaattaattgggcctttaaagttgataacaaaggagaaagaagggttggttgttaca 11642
Query: 645 attagtatgaatgatatatcaaacactttgaataattttccttcgcatcgcccaaagccc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11641 attagtatgaatgatatatcaaacactttgaataattttccttcgcatcgcccaaggccc 11582
Query: 705 gattcgttccaaactgttacaacaggaggaaaatggtacaaactccaaaacctgtacaag 764
|||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 11581 gattcgttccaaactggtacaacagaagaaaaatggaacaaactccaaaacctgtacaa- 11523
Query: 765 ggcggaagttgcttttttgggagaaaatatttct-ctatataccatcccattgttggtt- 822
|||||||||||||| ||||||||||||| |||| |||||||| || |||||||| |||
Sbjct: 11522 ggcggaagttgcttctttgggagaaaatcattctactatatacgat-ccattgtttgtta 11464
Query: 823 tgctttgttgggttaattgggacgatttcctccgaaaatccttggaagaagattc 877
|||| |||| ||||||||| ||||| ||| || ||||||||| ||||||||||||
Sbjct: 11463 tgctatgtttggttaattgtgacgagttcgtcagaaaatcctcggaagaagattc 11409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7925
Number of Sequences: 1807
Number of extensions: 7925
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)