BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC02FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig391 1376 0.0
>3x_Contig391
Length = 1411
Score = 1376 bits (694), Expect = 0.0
Identities = 768/790 (97%), Gaps = 2/790 (0%)
Strand = Plus / Plus
Query: 85 ccataacaattgtgatacactttgtcaagaatgtcattagtgaatttgggtaatgtttgc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccataacaattgtgatacactttgtcaagaatgtcattagtgaatttgggtaatgtttgc 450
Query: 145 gcgcacttgcaaaactgttcccgcgcaagaattggtttgacttcaatcccatatacaaag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcgcacttgcaaaactgttcccgcgcaagaattggtttgacttcaatcccatatacaaag 510
Query: 205 ttacacttgatctttttttataacttatacaagcatggcttcttatccagtttacaacga 264
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttacacttgaacttcgcttataacttatacaagcatggcttcttatccagtttacaacga 570
Query: 265 ggatctactaagggcccagatgtcacaccggtagacgtaacgccagataatatcgctact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggatctactaagggcccagatgtcacaccggtagacgtaacgccagataatatcgctact 630
Query: 325 agaaaactgtggttgggtttaaaatacagggaaaacaagccagttatttctagttgtaga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agaaaactgtggttgggtttaaaatacagggaaaacaagccagttatttctagttgtaga 690
Query: 385 ttgatatcaaaaccaaacttgagaatcagtctagatgcacatgatttgaagaaactatgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttgatatcaaaaccaaacttgagaatcagtctagatgcacatgatttgaagaaactatgt 750
Query: 445 tcaggtacctccgtcagattgatcaaacctttggctcctggtgaattaattttagtgaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tcaggtacctccgtcagattgatcaaacctttggctcctggtgaattaattttagtgaaa 810
Query: 505 tctgggaatgaaattatggatatcgatgatgctatcgccaagaaagtcggtggtgaagtg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tctgggaatgaaattatggatatcgatgatgctatcgccaagaaagtcggtggtgaagtg 870
Query: 565 ctatgcagaattaggtgaatcatcagtaaaattcccagcaataaagaccattagtcatat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ctatgcagaattaggtgaatcatcagtaaaattcccagcaataaagaccattagtcatat 930
Query: 625 aatcaaaaacaaagtgcagaatatttcatcaacatgtgtgatggaccatcgaaacttcca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aatcaaaaacaaagtgcagaatatttcatcaacatgtgtgatggaccatcgaaacttcca 990
Query: 685 atatcatcaaaaggaaatccacctcatatttcatgtatatagaaacattcaatcagtgcg 744
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 991 atatcatcaaaaggaaatccacctcatattccatgtatatagtaacattcaatcagtgcg 1050
Query: 745 attttcctttttagcgacaatcattcatcgtgtcaaatatcagttttattcatacactaa 804
||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 1051 attttcc-ttttagcgacaatcatcaatcgtgtcaaatatcagttttatacatacactaa 1109
Query: 805 tataattgtttacctggacattata-catttttttttccttaacgatacaattgaaacaa 863
||||||||| ||| || |||||||| |||| | ||| ||| ||||| |||| ||| ||||
Sbjct: 1110 tataattgtatacttgtacattatagcattatatttgcctaaacgagacaaatgagacaa 1169
Query: 864 atcttaaaaa 873
||| ||||||
Sbjct: 1170 atcataaaaa 1179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8347
Number of Sequences: 1807
Number of extensions: 8347
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)