BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC02RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1633 1332 0.0
>3x_Contig1633
Length = 12594
Score = 1332 bits (672), Expect = 0.0
Identities = 787/816 (96%), Gaps = 7/816 (0%)
Strand = Plus / Plus
Query: 56 tggacctatcttactcattgcctttacgcgttagagactacgacatcgccaaaccaggct 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggacctatcttactcattgcctttacgcgttagagactacgacatcgccaaaccaggct 60
Query: 116 tgaccttcggattagacttgtcatttttctagatcaaagtacacacttgcaaactattcc 175
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgac-ttcggattagacttgtcatttttctagatcaaagtacacacttgcaaactattcc 119
Query: 176 atctaagtataaaattcgagaagtggttcacaccctctgattttattatcaaagtataac 235
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 120 atctaagtataaaattcgagaagtggttcacaccctctgatattaaaatcaaagtataac 179
Query: 236 atttaaacatcattttttcctaaaaacatatataaatggttaaagtcaatattctgtata 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atttaaacatcattttttcctaaaaacatatataaatggttaaagtcaatattctgtata 239
Query: 296 aaagaaaaacaatattcaagtaatattcaggagttgcattaactgacatctaagagttac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaagaaaaacaatattcaagtaatattcaggagttgcattaactgacatctaagagttac 299
Query: 356 tacgacctattacgttgaaaaggtaaatgctggactttcaatagatcatatcgcgaaaat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tacgacctattacgttgaaaaggtaaatgctggactttcaatagatcatatcgcgaaaat 359
Query: 416 tactgtatttacgtatacgttttgaatgtggattgtatcttttatattcgatgatgaagc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tactgtatttacgtatacgttttgaatgtggattgtatcttttatattcgatgatgaagc 419
Query: 476 agaaaagtctcacaaagtatgcaaggcactccaatatggggtcgaatactcaattggaag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agaaaagtctcacaaagtatgcaaggcactccaatatggggtcgaatactcaattggaag 479
Query: 536 atccgcaaaatgtacttttaggatacaaacggataaaagtatttctcgtgttcatttact 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atccgcaaaatgtacttttaggatacaaacggataaaagtatttctcgtgttcatttact 539
Query: 596 gataaaatttgatggaagtgaccttataataacaaataagggtaaacttacaaagtttta 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 540 gataaaatttgatggaagtgaccttataataacaaataagggtaaacttacaaag-ttta 598
Query: 656 ttgaagaaataattcccttagatgagaccacttgtggtacacaatcagaatacagtggat 715
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 599 atgaagaaataattcccttagatgagacca-ttgtggtacacaatcagaatacagt-gat 656
Query: 716 atatattggaagtatgcccatcgatgttaatgtacgatttttctacgaagaatgggagat 775
| |||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 657 aaatattggaggtatgccaatcgatgttaatgtacgatatttctacgaagaatggaagat 716
Query: 776 ccctcccgtatt-gaactgattg-aacaaaatcacttggttcagaattttgggtgaagct 833
|| | | ||| ||||||| || |||||||||||| | |||||| ||| | ||||||||
Sbjct: 717 accacacagattagaactgaatgaaacaaaatcactggtttcagattttggtgtgaagct 776
Query: 834 ttctggatccttctct-agaaaaccccaacacaaat 868
||||| |||||||||| |||||||| ||||||||||
Sbjct: 777 ttctgaatccttctctaagaaaaccacaacacaaat 812
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7439
Number of Sequences: 1807
Number of extensions: 7439
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)