BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC03FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1128 1473 0.0
>3x_Contig1128
Length = 4759
Score = 1473 bits (743), Expect = 0.0
Identities = 776/786 (98%), Gaps = 1/786 (0%)
Strand = Plus / Minus
Query: 88 tgtaccgtgaagatatgactgcttctgaattggcagatgctatctctgatgtcaaggact 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4411 tgtaccgtgaagatatgactgcttctgaattggcagatgctatctctgatgtcaaggact 4352
Query: 148 acattaaagacatcaaggattccgatggtaactcttacagtggcaagcaagtcggtactg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4351 acattaaagacatcaaggattccgatggtaactcttacagtggcaagcaagtcggtactg 4292
Query: 208 ttgactcatggaacgttttggtcgatggtggatctgctaccgccattcaagctgctgact 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4291 ttgactcatggaacgttttggtcgatggtggatctgctaccgccattcaagctgctgact 4232
Query: 268 ttgtcatggcgaacgccttctcttactggcaaggtcaaactatggataatgcttcttact 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4231 ttgtcatggcgaacgccttctcttactggcaaggtcaaactatggataatgcttcttact 4172
Query: 328 cgttcttcgacgatatcatgcaagctctacaaactatccaaactaccaagggttctactg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4171 cgttcttcgacgatatcatgcaagctctacaaactatccaaactaccaagggttctactg 4112
Query: 388 acattcaattctgggttggtgaaactggctggccaaccgatggtaccaactttgaaagtg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4111 acattcaattctgggttggtgaaactggctggccaaccgatggtaccaactttgaaagtg 4052
Query: 448 cttacccaggtctagataacgctaagcaattttgggctgatggtatttgtgctatgagag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4051 cttacccaggtctagataacgctaagcaattttgggctgatggtatttgtgctatgagag 3992
Query: 508 gctggggtgtcaacgttatcgttttcgaagctttcgatgaggactggaaaccagatactt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3991 gctggggtgtcaacgttatcgttttcgaagctttcgatgaggactggaaaccagatactt 3932
Query: 568 ctggtatttccgatgttgaaaagtactggggtgtttgggatgccaacagaaacttgaagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3931 ctggtatttccgatgttgaaaagtactggggtgtttgggatgccaacagaaacttgaagt 3872
Query: 628 tcaagttggattgtgatttcagctcttaatttttgagttgagcttctcttctctttaaca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3871 tcaagttggattgtgatttcagctcttaatttttgagttgagcttctcttctctttaaca 3812
Query: 688 tacaatacagattgtgtgtattttttttacccttccactttctcatttgataccggttat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3811 tacaatacagattgtgtgtattttttttacccttccactttctcatttgataccggttat 3752
Query: 748 aattgntgacttgttgtttcctttcgtctcctattaacaactcataattatacaaatgaa 807
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3751 aattgttgacttgttgtttcctttcgtctcctattaacaactcaaaattatacaaatgaa 3692
Query: 808 gctttcatgtcacatttaggtcaccatttctttcacaaaattgaaccattcatactttgt 867
|||||||||||||||||||||||| ||| |||| ||||||| |||||||||| ||||
Sbjct: 3691 gctttcatgtcacatttaggtcacacattccttcagcaaattgatccattcatac-ttgt 3633
Query: 868 tactac 873
||||||
Sbjct: 3632 tactac 3627
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6374
Number of Sequences: 1807
Number of extensions: 6374
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)