BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC05FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1312 0.0
>3x_Contig189
Length = 1476
Score = 1312 bits (662), Expect = 0.0
Identities = 762/790 (96%), Gaps = 4/790 (0%)
Strand = Plus / Plus
Query: 86 taagagtaagtaaaagaagatcc-agagcatagaaattgatttgaaaagcagcataaaac 144
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 79 taagagtaagtaaaagaagatcccagagcatagaaattgatttgaaaagcagcataaaac 138
Query: 145 agtccctcgcgcctcattgcaaggatcttatttcagatcagtgagcctcctttatcgtaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 agtccctcgcgcctcattgcaaggatcttatttcagatcagtgagcctcctttatcgtaa 198
Query: 205 attagatcaccatgttttccagcgttttcaagactggatttcgctcactaaatccattag 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attagatcaccatgttttccagcgttttcaagactggatttcgctcactaaatccattag 258
Query: 265 aaagtctgcaagtaaccgctaggcgttttacacatgaatatgctccacgtttcaagaacc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaagtctgcaagtaaccgctaggcgttttacacatgaatatgctccacgtttcaagaacc 318
Query: 325 agactaagaagcaaaagggtcgtgtgccagtgcgtaccggtggctctactaagggtaatt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agactaagaagcaaaagggtcgtgtgccagtgcgtaccggtggctctactaagggtaatt 378
Query: 385 cgcttcaatttggtcaatttggtttaagattgaagtctgaaggtgtgagacttactgcgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cgcttcaatttggtcaatttggtttaagattgaagtctgaaggtgtgagacttactgcgt 438
Query: 445 tacagttgaaggaagccgataatgctattatgagatacgttagacctttgaataacggtc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacagttgaaggaagccgataatgctattatgagatacgttagacctttgaataacggtc 498
Query: 505 aattatggcgtcgtttgtgtacaaacattgctgtttgtatcaagggtaatgagaccagaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aattatggcgtcgtttgtgtacaaacattgctgtttgtatcaagggtaatgagaccagaa 558
Query: 565 tgggtaaaggtaagggtggatttgaccattggatggtcagagtacccaccggtaaagtga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggtaaaggtaagggtggatttgaccattggatggtcagagtacccaccggtaaagtga 618
Query: 625 tctttgagatggcaggtgacaatctacacgagaaagtagcacgtgaggcgttttagaaag 684
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 619 tctttgagatggcaggtgacaatctacacgagaaagtagcacgtgaggcg-tttagaaag 677
Query: 685 gcagcaaccaagcttcctggcctattcgaattcatatcgaaagattctctggttagagtt 744
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 678 gcagcaaccaagcttcctggcctatacgaattcatatcgaaagattctctggtaagagta 737
Query: 745 agtatcaagagtgtaaaagatccaaa-gaccatcccaagatcatttcttttgaagaacta 803
||||||||||||||||||||||||| ||| |||| ||||||| || ||||||||||||
Sbjct: 738 ggtatcaagagtgtaaaagatccaaaggacgatccaaagatcaattactttgaagaacta 797
Query: 804 agaaagaaccttac-aagggattttttccaaggtttaagtcccaacaaccggatattaaa 862
| ||||| | ||| |||| || | || ||| ||| |||||||| |||||||| || |
Sbjct: 798 aagaagaaacctacaaaggaatatattacaaagttgaagtcccagcaaccggaatataga 857
Query: 863 atgttcaggg 872
||||||||||
Sbjct: 858 atgttcaggg 867
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5797
Number of Sequences: 1807
Number of extensions: 5797
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)