BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC05RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1144 0.0
>3x_Contig1442
Length = 8270
Score = 1144 bits (577), Expect = 0.0
Identities = 629/641 (98%), Gaps = 4/641 (0%)
Strand = Plus / Minus
Query: 44 gcttgtaacaaacgatcgtctccagatcaattgagcctataactctttcaccactatgaa 103
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5243 gcttgtaacaaacgatcgtctccagatcaattgagc-tataactctttcaccactatgaa 5185
Query: 104 gaaaaat-acataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagt 162
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 gaaaaatcacataaaaaaaccgtgaacctgaacaggaactttcaaaagtgcgttcttagt 5125
Query: 163 gaaaagaaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 gaaaagaaaaaaacaccaaatgtatcttcactggctcctgaacaacaccttatatttcaa 5065
Query: 223 aacaataaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttactttta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 aacaataaagtcatctcatgaccatctattcgtaaaccaactgctcttctcttactttta 5005
Query: 283 cgtatgttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 cgtatgttgagcctttccgatttctcaacatcccaacaaattcgcaaaaaccatgcgatg 4945
Query: 343 ctgaagagggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 ctgaagagggaaatggtgttacccgaccattacgttatcatgagtagacacgtgaccgta 4885
Query: 403 aagatctttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 aagatctttaggtgtcctcgctaaggtgatgatcggtatcacctggtgttcggtaccgct 4825
Query: 463 cagtggttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 cagtggttgtatttggtgttgggatgatcgtatctccaaagcctgttgtggaaggagtag 4765
Query: 523 ttggagggattgttgtagcttctgttgggttttgttgttgcgggtgatgatgatggtggt 582
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4764 ttggagggattgttgtagcttctgttgggttttgttgttgcggttgatgatgatggtggt 4705
Query: 583 gatgatgggtattctgatgttctggatccgtgtctgattcagaagcgtctttggtgggcg 642
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 4704 gatgatgggtattctgatgttctggatccgtgtctgattcagaagcgtctctggtaggcg 4645
Query: 643 -ttgaacttcttgtctattt-cagtggtgtttgttgggttt 681
||||||| || |||||| ||||||||||||||| ||||
Sbjct: 4644 tttgaactcctgtactatttccagtggtgtttgttgagttt 4604
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8704
Number of Sequences: 1807
Number of extensions: 8704
Number of successful extensions: 131
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)