BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC06FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig186 1249 0.0
>3x_Contig186
Length = 1329
Score = 1249 bits (630), Expect = 0.0
Identities = 662/670 (98%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 87 ttaattagagttagagacataaccaacaaggattcgatttgtagtgtatcaggaacagga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttaattagagttagagacataaccaacaaggattcgatttgtagtgtatcaggaacagga 329
Query: 147 gttcctgttcgcaacgtattctgtcttttttactgaactcaaacggaaatcaaattcctc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gttcctgttcgcaacgtattctgtcttttttactgaactcaaacggaaatcaaattcctc 389
Query: 207 ttcatgtcgggaaatgaacaagtaaaaggaacgacgaagataatgactgtctgtatggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttcatgtcgggaaatgaacaagtaaaaggaacgacgaagataatgactgtctgtatggaa 449
Query: 267 ataccatcatttggattgttttttttttgagtatatcgattatgatgaccgctgtcgccc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ataccatcatttggattgttttttttttgagtatatcgattatgatgaccgctgtcgccc 509
Query: 327 caaacggatttcgaaaatatgaacgattcgactagcattagccaaacactgaaaattctg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 caaacggatttcgaaaatatgaacgattcgactagcattagccaaacactgaaaattctg 569
Query: 387 atcaatcgattactttattaaaataaactgtccaggcaatacagtacaagttatatcttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atcaatcgattactttattaaaataaactgtccaggcaatacagtacaagttatatcttc 629
Query: 447 ttgtttgtttgactttcttcatttccggatatattcgggtagtcgaagtgtacgttagat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttgtttgtttgactttcttcatttccggatatattcgggtagtcgaagtgtacgttagat 689
Query: 507 gtgtcagtggattactcggcattctctatcttaaatatatagacctattaatgatgaact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gtgtcagtggattactcggcattctctatcttaaatatatagacctattaatgatgaact 749
Query: 567 aaaagtttccatgctaatcatgaataaaattcaaaattttaaaggattagaaacacgctt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aaaagtttccatgctaatcatgaataaaattcaaaattttaaaggattagaaacacgctt 809
Query: 627 tttgttatctcttacagtcctgaatacgtttatttatagcattagctgttccattcttgt 686
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 810 tttgttatctctaacagtcctgaatacgtttatatatagcattagctgttccattcttgt 869
Query: 687 acttgtaacttgtgctttttcgtagtgtgtggtttttttatttttggttgccggtttttg 746
||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| | ||
Sbjct: 870 acttgtaacttgtgcttttcggtagtgtgt-gtttttttatttttgg-tgccggtatctg 927
Query: 747 aattgtaaac 756
||||||||||
Sbjct: 928 aattgtaaac 937
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9437
Number of Sequences: 1807
Number of extensions: 9437
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)