BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC06RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1016 1092 0.0
>3x_Contig1016
Length = 4444
Score = 1092 bits (551), Expect = 0.0
Identities = 617/630 (97%), Gaps = 7/630 (1%)
Strand = Plus / Plus
Query: 48 atcgttcgtattattcacgatttcggtcaattcaagttctcttgca-gcactctttcctt 106
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2642 atcgttcgtattattcacgatttcggtcaattcaagttctcttgcaagcactctttcctt 2701
Query: 107 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 ctgtcgttgttccatttcgttataatctaattgggcttgtgagccgtacctgtcctgttc 2761
Query: 167 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttatcacatttcc 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2762 ctgcaataacgggtcattttcgtcgctatcttgacgaaagcagcaacttagcacatttcc 2821
Query: 227 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 cataatattttaaatgttttaggcagattttcggtagctactgatgctagaattcgttag 2881
Query: 287 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 taaacgtaaactatctcattgccttggtggctttaaggtaaaggaactacacttactata 2941
Query: 347 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgtgggg 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2942 gatgttgataaaaagcactgggaagcataaatttcatattctagtatgtgggttgt-ggg 3000
Query: 407 tgttntgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagcttt 466
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 tgttttgaatagggtaaccccgtcttctttatctatcgggctacatagataagcagcttt 3060
Query: 467 tagttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 tagttactgaatacagtgaacatcatgcaaaccaggaagtacgcacttaactcgacccgt 3120
Query: 527 tgttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3121 tgttaaagaccactatgatgcaactatctatcgcttcagatcctgtttctttctctcttt 3180
Query: 587 ag-accttcccata-ggactacattctttttatgccccaattgaaaaattgaaaaaattc 644
|| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 3181 agaaccttcccatatggactacattctttctatg-cccaattgaaaaattgaaaaatttc 3239
Query: 645 attttaaaaactattaaccttacaatttga 674
| | ||||||||| ||| ||||||||||||
Sbjct: 3240 a-tctaaaaacta-taaacttacaatttga 3267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,485
Number of Sequences: 1807
Number of extensions: 13485
Number of successful extensions: 103
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)