BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC07FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1702 1142 0.0
>3x_Contig1702
Length = 15454
Score = 1142 bits (576), Expect = 0.0
Identities = 619/632 (97%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 86 acgccatattcatgaatgtgttggaaatagatgaacaagggaaagttatcaacgtcaaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12351 acgccatattcatgaatgtgttggaaatagatgaacaagggaaagttatcaacgtcaaac 12410
Query: 146 atgccgagaaacgagcaacagactacattaggtcttactgtgaatcgaccttcgaggttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12411 atgccgagaaacgagcaacagactacattaggtcttactgtgaatcgaccttcgaggttg 12470
Query: 206 atccacctttcgaagattgggaagttcagttatattgaaaaatgtacctccattagcaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12471 atccacctttcgaagattgggaagttcagttatattgaaaaatgtacctccattagcaac 12530
Query: 266 tattttagaccggcgttggttttctgggagcaattggctgcttatacaccagaatagtgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12531 tattttagaccggcgttggttttctgggagcaattggctgcttatacaccagaatagtgt 12590
Query: 326 atgtttagaggctgctacatagtcaaaagatagtattagtattcatacatgatatcaacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12591 atgtttagaggctgctacatagtcaaaagatagtattagtattcatacatgatatcaacc 12650
Query: 386 tttattcacactggatataggcaaccaattataaatccgggtaacttgtagtttacgttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12651 tttattcacactggatataggcaaccaattataaatccgggtaacttgtagtttacgttg 12710
Query: 446 actatcaaagagaatcaaccaaaaggtaataacgtccagtaaacttaaacagtaaaacag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12711 actatcaaagagaatcaaccaaaaggtaataacgtccagtaaacttaaacagtaaaacag 12770
Query: 506 aagttttctgatataaagaaggtggaaaagccagacttaaaacatttgagaacgtttaaa 565
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 12771 aagttttctgatataaagaaggtggaaaagccagacttaaaacattagagaacgtataaa 12830
Query: 566 tttgaagaaattcattattggttccatatatagcacccctaattggagatcaattggggt 625
||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||
Sbjct: 12831 tttgaagaaattcattattggttccatatatagtacccctaattggagatctaattgggt 12890
Query: 626 atctgcgttctctgtttttttaattaggagacagacaactttttattgtattacagaccg 685
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||
Sbjct: 12891 atctgcgttctctgtttttctaattaggagacagacaactttttattgaataacagagcg 12950
Query: 686 gaaagccattgttactatccttttaggaactg 717
|||||| ||||||||||| |||||| ||||||
Sbjct: 12951 gaaagcaattgttactat-cttttatgaactg 12981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7737
Number of Sequences: 1807
Number of extensions: 7737
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)