BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1370 0.0
>3x_Contig1762
Length = 22098
Score = 1370 bits (691), Expect = 0.0
Identities = 743/758 (98%), Gaps = 2/758 (0%)
Strand = Plus / Plus
Query: 52 aaaggcctttttttgtacatattgcagttgattgtacgcttgcccgcaggttagaaaatt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13674 aaaggcctttttttgtacatattgcagttgattgtacgcttgcccgcaggttagaaaatt 13733
Query: 112 ggcgaaacgcgttaaacgacgggacaaacgttgttgtcaatggtggttcaaaaggcaagg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13734 ggcgaaacgcgttaaacgacgggacaaacgttgttgtcaatggtggttcaaaaggcaagg 13793
Query: 172 accatgctcctttgaactgtcatagtattgagcaaatacttgaaagtatggattttttcg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13794 accatgctcctttgaactgtcatagtattgagcaaatacttgaaagtatggattttttcg 13853
Query: 232 attacgcaaaggaggattcgctaacgtctattaacgaacgctctcttattaaagttgtat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13854 attacgcaaaggaggattcgctaacgtctattaacgaacgctctcttattaaagttgtat 13913
Query: 292 ttcattctacggtaccgttcgaatcggtgaaaaaacagctatatgagcaattaaacaacg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13914 ttcattctacggtaccgttcgaatcggtgaaaaaacagctatatgagcaattaaacaacg 13973
Query: 352 taatagattcaaagtcgctgacagcaccattaagaccgtgttgggatacgtattttatga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13974 taatagattcaaagtcgctgacagcaccattaagaccgtgttgggatacgtattttatga 14033
Query: 412 aattggcgaacttggctgcgtcaagagccaactgtatgaaacgtagggttggttgtgtca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14034 aattggcgaacttggctgcgtcaagagccaactgtatgaaacgtagggttggttgtgtca 14093
Query: 472 tcgtacgggactgcagagtcgtagcaactggatacaatgggactccaaggaatatgaaga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14094 tcgtacgggactgcagagtcgtagcaactggatacaatgggactccaaggaatatgaaga 14153
Query: 532 actgcaaccagngtggatgttcaagatgtaacgatggggatgataagtcgttgcatactt 591
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14154 actgcaaccagggtggatgttcaagatgtaacgatggggatgataagtcgttgcatactt 14213
Query: 592 gtctatgcttgcatgcttgagaaaacgcgttgttagaagcgggtagagacagggtcgggc 651
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14214 gtctatgcttgcatgctgaagaaaacgcgttgttagaagcgggtagagacagggtcgggc 14273
Query: 652 caaacgctatattatactgcgattcatgtccctgcctgacatgttcagtgaagatcgttc 711
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14274 caaacgctatattatactgcgatacatgtccctgcctgacatgttcagtgaagatcgttc 14333
Query: 712 aaacatgcattaaagaggtagtttatttacatttcctataaattggacgaacaaagtctg 771
||||| ||||||||||||||||||||| ||| |||||||| | |||||||||||||||||
Sbjct: 14334 aaacaggcattaaagaggtagtttattcaca-ttcctatagaatggacgaacaaagtctg 14392
Query: 772 aatggtctaatgaacggttaagtgacctgtaaggcaac 809
|| | ||||| | ||||| |||||||| ||||||||||
Sbjct: 14393 aaggttctaagggacggtaaagtgacc-gtaaggcaac 14429
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5079
Number of Sequences: 1807
Number of extensions: 5079
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)