BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC09FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1261 0.0
>3x_Contig1582
Length = 14087
Score = 1261 bits (636), Expect = 0.0
Identities = 694/707 (98%), Gaps = 6/707 (0%)
Strand = Plus / Minus
Query: 85 tccatcagaagaaacccacgtcatttctgatttggatgaatcatcattaaaaacttctat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11192 tccatcagaagaaacccacgtcatttctgatttggatgaatcatcattaaaaacttctat 11133
Query: 145 tattacatagtaagtagcccctgtacatagtgaataaaatcaaggtatcatagttcatcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11132 tattacatagtaagtagcccctgtacatagtgaataaaatcaaggtatcatagttcatcc 11073
Query: 205 cagatgttgtgagatgatgatgatgatgataatggacgggcttcattccttagatcgagc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11072 cagatgttgtgagatgatgatgatgatgataatggacgggcttcattccttagatcgagc 11013
Query: 265 aattggtcattatatagtgctacgtcaagggaatggaacaacttcaactttagcacacgt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11012 aattggtcattatatagtgctacgtcaagggaatggaacaacttcaactttagcacacgt 10953
Query: 325 atcttgtcatctttaccgatcggttcctcatcaatcgtgtgggcagcatcagtatcgtca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10952 atcttgtcatctttaccgatcggttcctcatcaatcgtgtgggcagcatcagtatcgtca 10893
Query: 385 ttgagtaattgtttctgtgtttctacgaccttttgaataccctcttgtatcgtatctcga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10892 ttgagtaattgtttctgtgtttctacgaccttttgaataccctcttgtatcgtatctcga 10833
Query: 445 agctggttaatttcctgtaccagtttatctatgtcttgttgcaatttcggtatgtttaat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10832 agctggttaatttcctgtaccagtttatctatgtcttgttgcaatttcggtatgtttaat 10773
Query: 505 tcgtcctctacgcgtttcacttggcttgtttgctcctgaaaattctttttaagtgcctgc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10772 tcgtcctctacgcgtttcacttggcttgtttgctcctgaaaattctttttaagtgcctgc 10713
Query: 565 actttagtttgctgtctttgcagctgtgattgcaattgtttcatgagctcattgtggtgt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10712 actttagtttgctgtctttgcagctgtgattgcaattgtttcatgagctcattgtggtgt 10653
Query: 625 gttttgtttctcagccatcaatttcgtgagctgtcttatattactcttgatctctttaat 684
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 10652 g-tttgtttctcagccatcaatttcgtgagctgtctcatattactcttgatctctttaat 10594
Query: 685 attagagacatcgctttcaatgatgaaattggaccgggttttgcttgtaaagctcttctg 744
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct: 10593 attagagacatcgctttcaatgatgaaattggaccggg-tttgctgtaaaagctctactg 10535
Query: 745 gattattggggccgtgacatttggggtgctgcaattatccactgttg 791
||| ||| | ||||||||||| ||||||||||| ||||||||||||
Sbjct: 10534 gatcatt-gagccgtgacatt--gggtgctgcaa-tatccactgttg 10492
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7549
Number of Sequences: 1807
Number of extensions: 7549
Number of successful extensions: 250
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)