BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC09RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig386 1479 0.0
>3x_Contig386
Length = 1502
Score = 1479 bits (746), Expect = 0.0
Identities = 841/862 (97%), Gaps = 8/862 (0%)
Strand = Plus / Minus
Query: 51 gcttcttatcaaaatcacctgcctttttcttgttgtttggaat-atacaacgaacgaaat 109
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 962 gcttcttatcaaaatcacctgcctttttcttgttgtttggaattatacaacgaacgaaat 903
Query: 110 ggggatccgtattgccaagctgttcaatgagtgtatggagctgttccctatgtttgttag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ggggatccgtattgccaagctgttcaatgagtgtatggagctgttccctatgtttgttag 843
Query: 170 atgatgtcctaaaagaactgcctctaatgcgatctgcgaaaaattgtgataccatatggt 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 842 atgatgtcctaaaagaactgcctctaatgcgatctgcgaaaaattgtgataccagagggt 783
Query: 230 tcgcacaatcattgagtacctgcaataaattttcatttaaaggatctttattctttgata 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tcgcacaatcattgagtacctgcaataaattttcatttaaaggatctttattctttgata 723
Query: 290 gccaatcagtaacgttgtattcaacatcacctgcataatgctttagtataaagcagttat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gccaatcagtaacgttgtattcaacatcacctgcataatgctttagtataaagcagttat 663
Query: 350 ccagcttagaccttttgaatttagtggatttattatcccaagatgaaagtaatttcgaat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccagcttagaccttttgaatttagtggatttattatcccaagatgaaagtaatttcgaat 603
Query: 410 aaaaagaggcatctgaagattttggtaagatcgattcttcttctaaaatcggtagtatac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaaaagaggcatctgaagattttggtaagatcgattcttcttctaaaatcggtagtatac 543
Query: 470 ctggaatgctgctgtttttctgttcaattaaatcaattgtggtttgtaagtctttgccat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctggaatgctgctgtttttctgttcaattaaatcaattgtggtttgtaagtctttgccat 483
Query: 530 aatcgatgaaattccattggatgtcttccttttgatattcattttgttccaatacaaaca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatcgatgaaattccattggatgtcttccttttgatattcattttgttccaatacaaaca 423
Query: 590 tatgatgattgaaaaactgttgtaatttctcatttgtgtaattgatacatagttgttcga 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatgatgattgaaaaactgttgtaatttctcatttgtgtaattgatacatagttgttcga 363
Query: 650 aagaattatctttgaaaatttcgaacccagcgatatccaataattcaataaaatattcag 709
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 362 aagaattatctttgaaaatttcgaacccagcgatatccaataatccaataaaatattcag 303
Query: 710 tcatcgatccatgctctaaactcttgttaatttgatttacaatatattcgaaaagcttct 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcatcgatccatgctctaaactcttgttaatttgatttacaatatattcgaaaagcttct 243
Query: 770 tatataatgattcgggataaaagagttaagaattgacctttgcctgtgaggcattttttg 829
||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 242 catataatga-tcgggat-aaagagttaagaattgacc-ttgcctgtgaggca-tttttg 187
Query: 830 gcttgtgattcccctttctttaccaaccctttgttttaagttttagaacaacttaacttg 889
|||||||| | ||| ||||||||| | |||||| |||| ||||||||||| | | |||||
Sbjct: 186 gcttgtga-tacccattctttacc-agcctttgatttaggttttagaacagc-tgacttg 130
Query: 890 aaatctttttcctgaactccta 911
||||| | ||||||||||||||
Sbjct: 129 aaatcgtcttcctgaactccta 108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9010
Number of Sequences: 1807
Number of extensions: 9010
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)