BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZC11FM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1214                                                        1253   0.0  

>3x_Contig1214 
          Length = 6334

 Score = 1253 bits (632), Expect = 0.0
 Identities = 736/763 (96%), Gaps = 7/763 (0%)
 Strand = Plus / Minus

                                                                        
Query: 85   cgccatcaatatcttcggcgatgatcaacaatggtcttctggtttggtttgacaattcca 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5267 cgccatcaatatcttcggcgatgatcaacaatggtcttctggtttggtttgacaattcca 5208

                                                                        
Query: 145  aagaaggcaagatatcctggattgaggagatcttcttttcactcaataagatcaaaggtt 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5207 aagaaggcaagatatcctggattgaggagatcttcttttcactcaataagatcaaaggtt 5148

                                                                        
Query: 205  tttcaaattccactttaccagatttagcgtcggtaataaagtatggagaaatgaaaccac 264
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5147 tttcaaattccaccttaccagatttagcgtcggtaataaagtatggagaaatgaaaccac 5088

                                                                        
Query: 265  ggtcgaatctcataccttcagtgacttccaattcatcttccaaggttctaccctctctga 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5087 ggtcgaatctcataccttcagtgacttccaattcatcttccaaggttctaccctctctga 5028

                                                                        
Query: 325  tagtgatgacaccttccttaccaactttttccatggctgaagccaacaacttaccaacgt 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5027 tagtgatgacaccttccttaccaactttttccatggctgaagccaacaacttaccaacgt 4968

                                                                        
Query: 385  gagcatccccgttggcagaaatagttgccacttgagcgatttcagcagaagtggtgattt 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4967 gagcatccccgttggcagaaatagttgccacttgagcgatttcagcagaagtggtgattt 4908

                                                                        
Query: 445  ctttcttgttctctgacaagtattgaattactttttcgacagcagcttgagtacctcttc 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4907 ctttcttgttctctgacaagtattgaattactttttcgacagcagcttgagtacctcttc 4848

                                                                        
Query: 505  tcaaatccattgggttacaaccagctgcaacattcttaacggattcagtgaaaatggcct 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4847 tcaaatccattgggttacaaccagctgcaacattcttaacggattcagtgaaaatggcct 4788

                                                                        
Query: 565  tacctaagacagtggcagaagtggtaccgtcaccggcagcttcgtttgtcttggaatgca 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 4787 tacctaagacagtggcagaagtggtaccgtcaccggcagcttcgtttgtcttggaagcaa 4728

                                                                        
Query: 625  cttcttgtaaaagcttagcacccatgttttcgaacttatcttccaaagtaatggctctag 684
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4727 cttcttgtaaaagcttagcacccatgttttcgaacttatcttccaaagtaatggctctag 4668

                                                                        
Query: 685  caacagtaacaccatccttggtgatcttttggagcggaaaattggttgctcattccaaac 744
            |||||||||||||||||||||||||| |||||||||  ||| |||||||||| || ||||
Sbjct: 4667 caacagtaacaccatccttggtgatc-tttggagcgccaaa-tggttgctcaatcaaaac 4610

                                                                        
Query: 745  gttttttcccttttgggccccaaagtggccaaaaccactttccgctagagtttcaaacac 804
            |||| | ||  ||| || |||||||||| || || ||  ||||||||||||||| |||||
Sbjct: 4609 gtttctacc--ttttggacccaaagtgg-cagaaacagcttccgctagagtttc-aacac 4554

                                                       
Query: 805  ccttttacaaggcgagttttaccttaaacaccaaactttaatt 847
            ||||| ||||||| || | |||||| |||||||||||||||||
Sbjct: 4553 cctttaacaaggc-agctctaccttcaacaccaaactttaatt 4512


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7073
Number of Sequences: 1807
Number of extensions: 7073
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)